Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : EY8    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C24 O23 C O sing 1.43 N N
2 C24 C25 C C sing 1.51 N N
3 O26 C25 O C doub 1.21 N N
4 O23 C22 O C sing 1.36 N N
5 C25 N27 C N sing 1.35 N N
6 C22 C21 C C doub 1.39 N Y
7 C22 C28 C C sing 1.4 N Y
8 N27 C28 N C sing 1.4 N N
9 C21 C20 C C sing 1.38 N Y
10 C28 C29 C C doub 1.38 N Y
11 C20 C19 C C doub 1.4 N Y
12 C29 C19 C C sing 1.4 N Y
13 C19 C17 C C sing 1.48 N N
14 C13 C14 C C doub 1.38 N Y
15 C13 C11 C C sing 1.38 N Y
16 C17 O18 C O doub 1.22 N N
17 C17 N16 C N sing 1.35 N N
18 C14 C15 C C sing 1.39 N Y
19 F12 C11 F C sing 1.35 N N
20 C11 C10 C C doub 1.38 N Y
21 C15 N16 C N sing 1.41 N N
22 C15 C9 C C doub 1.39 N Y
23 C10 C9 C C sing 1.39 N Y
24 N16 C6 N C sing 1.47 N N
25 C9 O8 C O sing 1.36 N N
26 C7 O8 C O sing 1.43 N N
27 C7 C6 C C sing 1.54 N N
28 C6 C5 C C sing 1.53 N N
29 O4 S2 O S doub 1.42 N N
30 C5 S2 C S sing 1.81 N N
31 N1 S2 N S sing 1.66 N N
32 S2 O3 S O doub 1.42 N N
33 C7 H1 C H sing 1.09 N N
34 C7 H2 C H sing 1.09 N N
35 C10 H3 C H sing 1.08 N N
36 C13 H4 C H sing 1.08 N N
37 C14 H5 C H sing 1.08 N N
38 C20 H6 C H sing 1.08 N N
39 C21 H7 C H sing 1.08 N N
40 C24 H8 C H sing 1.09 N N
41 C24 H9 C H sing 1.09 N N
42 N1 H10 N H sing 0.97 N N
43 N1 H11 N H sing 0.97 N N
44 C5 H12 C H sing 1.09 N N
45 C5 H13 C H sing 1.09 N N
46 C6 H14 C H sing 1.09 N N
47 N27 H15 N H sing 0.97 N N
48 C29 H16 C H sing 1.08 N N