Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
G51
Bonds between two atoms of the molecule
Total Number of Bonds: 61
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
O40
C27
O
C
sing
1.37
N
N
2
O40
C41
O
C
sing
1.44
N
N
3
C28
C27
C
C
doub
1.38
N
Y
4
C28
C29
C
C
sing
1.38
N
Y
5
C27
C26
C
C
sing
1.39
N
Y
6
C41
O42
C
O
sing
1.44
N
N
7
C29
C24
C
C
doub
1.38
N
Y
8
C26
O42
C
O
sing
1.36
N
N
9
C26
C25
C
C
doub
1.39
N
Y
10
C24
C25
C
C
sing
1.38
N
Y
11
C24
C23
C
C
sing
1.51
N
N
12
C23
N21
C
N
sing
1.47
N
N
13
N21
C20
N
C
sing
1.35
N
N
14
C20
O22
C
O
doub
1.22
N
N
15
C20
C17
C
C
sing
1.47
N
N
16
C18
C17
C
C
sing
1.42
N
Y
17
C18
N19
C
N
doub
1.3
N
Y
18
C17
C5
C
C
doub
1.39
N
Y
19
N19
N4
N
N
sing
1.39
N
Y
20
C5
N4
C
N
sing
1.35
N
Y
21
C5
N6
C
N
sing
1.38
N
N
22
N4
C3
N
C
sing
1.47
N
N
23
F57
C13
F
C
sing
1.4
N
N
24
N6
C1
N
C
sing
1.47
N
N
25
F58
C13
F
C
sing
1.4
N
N
26
C13
C3
C
C
sing
1.53
N
N
27
C13
F56
C
F
sing
1.4
N
N
28
C3
C2
C
C
sing
1.54
N
N
29
C1
C2
C
C
sing
1.54
N
N
30
C1
C7
C
C
sing
1.51
N
N
31
C12
C7
C
C
doub
1.38
N
Y
32
C12
C11
C
C
sing
1.38
N
Y
33
C7
C8
C
C
sing
1.38
N
Y
34
C11
C10
C
C
doub
1.38
N
Y
35
C8
C9
C
C
doub
1.38
N
Y
36
C10
C9
C
C
sing
1.38
N
Y
37
C10
C32
C
C
sing
1.51
N
N
38
C33
C32
C
C
sing
1.53
N
N
39
N21
H2
N
H
sing
0.97
N
N
40
C23
H232
C
H
sing
1.09
N
N
41
C23
H231
C
H
sing
1.09
N
N
42
C29
H29
C
H
sing
1.08
N
N
43
C28
H28
C
H
sing
1.08
N
N
44
C41
H412
C
H
sing
1.09
N
N
45
C41
H411
C
H
sing
1.09
N
N
46
C25
H25
C
H
sing
1.08
N
N
47
C18
H18
C
H
sing
1.08
N
N
48
C3
H3
C
H
sing
1.09
N
N
49
N6
HN6
N
H
sing
1.01
N
N
50
C1
H1
C
H
sing
1.09
N
N
51
C2
H22
C
H
sing
1.09
N
N
52
C2
H21
C
H
sing
1.09
N
N
53
C12
H12
C
H
sing
1.08
N
N
54
C11
H11
C
H
sing
1.08
N
N
55
C32
H322
C
H
sing
1.09
N
N
56
C32
H321
C
H
sing
1.09
N
N
57
C33
H332
C
H
sing
1.09
N
N
58
C33
H331
C
H
sing
1.09
N
N
59
C33
H333
C
H
sing
1.09
N
N
60
C9
H9
C
H
sing
1.08
N
N
61
C8
H8
C
H
sing
1.08
N
N