Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : G52    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C3 C2 C C doub 1.39 N Y
2 O39 C2 O C sing 1.36 N N
3 C2 C7 C C sing 1.39 N Y
4 C3 C4 C C sing 1.38 N Y
5 C3 H3 C H sing 1.08 N N
6 C4 C5 C C doub 1.38 N Y
7 C4 H4 C H sing 1.08 N N
8 C5 C6 C C sing 1.38 N Y
9 C5 S8 C S sing 1.76 N N
10 C7 C6 C C doub 1.38 N Y
11 C6 H6 C H sing 1.08 N N
12 C7 H7 C H sing 1.08 N N
13 O9 S8 O S doub 1.42 N N
14 S8 O10 S O doub 1.42 N N
15 S8 N11 S N sing 1.66 N N
16 N11 C16 N C sing 1.47 N N
17 N11 C12 N C sing 1.46 N N
18 C12 C13 C C sing 1.53 N N
19 C12 H12 C H sing 1.09 N N
20 C12 H12A C H sing 1.09 N N
21 C14 C13 C C sing 1.53 N N
22 C13 C15 C C sing 1.53 N N
23 C13 H13 C H sing 1.09 N N
24 C14 H14 C H sing 1.09 N N
25 C14 H14A C H sing 1.09 N N
26 C14 H14B C H sing 1.09 N N
27 C15 H15 C H sing 1.09 N N
28 C15 H15A C H sing 1.09 N N
29 C15 H15B C H sing 1.09 N N
30 C16 C17 C C sing 1.53 N N
31 C16 H16 C H sing 1.09 N N
32 C16 H16A C H sing 1.09 N N
33 C19 C17 C C sing 1.53 N N
34 C17 O18 C O sing 1.43 N N
35 C17 H17 C H sing 1.09 N N
36 O18 HO18 O H sing 0.97 N N
37 C32 C19 C C sing 1.53 N N
38 C19 N20 C N sing 1.46 N N
39 C19 H19 C H sing 1.09 N N
40 N20 C21 N C sing 1.35 N N
41 N20 HN20 N H sing 0.97 N N
42 O22 C21 O C doub 1.22 N N
43 C21 O23 C O sing 1.35 N N
44 O23 C24 O C sing 1.45 N N
45 C31 C24 C C sing 1.54 N N
46 C24 C25 C C sing 1.54 N N
47 C24 H24 C H sing 1.09 N N
48 O26 C25 O C sing 1.44 N N
49 C25 H25 C H sing 1.09 N N
50 C25 H25A C H sing 1.09 N N
51 C27 O26 C O sing 1.44 N N
52 C31 C27 C C sing 1.56 N N
53 O28 C27 O C sing 1.44 N N
54 C27 H27 C H sing 1.09 N N
55 C29 O28 C O sing 1.44 N N
56 O41 C29 O C sing 1.43 N N
57 C30 C29 C C sing 1.55 N N
58 C29 H29 C H sing 1.09 N N
59 C43 C30 C C sing 1.55 N N
60 C30 C31 C C sing 1.55 N N
61 C30 H30 C H sing 1.09 N N
62 C31 H31 C H sing 1.09 N N
63 C38 C32 C C sing 1.51 N N
64 C32 H32 C H sing 1.09 N N
65 C32 H32A C H sing 1.09 N N
66 C34 C33 C C doub 1.38 N Y
67 C33 C38 C C sing 1.38 N Y
68 C33 H33 C H sing 1.08 N N
69 C35 C34 C C sing 1.38 N Y
70 C34 H34 C H sing 1.08 N N
71 C35 C36 C C doub 1.38 N Y
72 C35 H35 C H sing 1.08 N N
73 C36 C37 C C sing 1.38 N Y
74 C36 H36 C H sing 1.08 N N
75 C37 C38 C C doub 1.38 N Y
76 C37 H37 C H sing 1.08 N N
77 O39 C40 O C sing 1.43 N N
78 C40 H40 C H sing 1.09 N N
79 C40 H40A C H sing 1.09 N N
80 C40 H40B C H sing 1.09 N N
81 C42 O41 C O sing 1.44 N N
82 C43 C42 C C sing 1.58 N N
83 C42 H42 C H sing 1.09 N N
84 C42 H42A C H sing 1.09 N N
85 C43 H43 C H sing 1.09 N N
86 C43 H43A C H sing 1.09 N N