Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : G5Q    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OD2 CG O C doub 1.21 N N
2 CG OD1 C O sing 1.34 N N
3 CG CD C C sing 1.51 N N
4 CD CA C C sing 1.53 N N
5 O3' C3' O C sing 1.43 N N
6 O2' C2' O C sing 1.43 N N
7 C4' C5' C C sing 1.53 N N
8 C4' C3' C C sing 1.54 N N
9 C4' O4' C O sing 1.44 N N
10 C5' O5' C O sing 1.43 N N
11 CA N C N sing 1.47 N N
12 CA C C C sing 1.51 N N
13 C3' C2' C C sing 1.55 N N
14 O4' C1' O C sing 1.44 N N
15 C2' C1' C C sing 1.55 N N
16 C N3S C N sing 1.35 N N
17 C O C O doub 1.21 N N
18 C1' N1 C N sing 1.46 N N
19 N3S S N S sing 1.66 N N
20 O5' S O S sing 1.52 N N
21 O1S S O S doub 1.42 N N
22 O2 C2 O C doub 1.22 N N
23 S O2S S O doub 1.42 N N
24 N1 C2 N C sing 1.35 N N
25 N1 C6 N C sing 1.37 N N
26 C2 N3 C N sing 1.35 N N
27 C6 C5 C C doub 1.35 N N
28 N3 C3U N C sing 1.46 N N
29 N3 C4 N C sing 1.35 N N
30 C5 C4 C C sing 1.42 N N
31 C4 O4 C O doub 1.22 N N
32 N H1 N H sing 1.01 N N
33 N H2 N H sing 1.01 N N
34 CA H4 C H sing 1.09 N N
35 CD H5 C H sing 1.09 N N
36 CD H6 C H sing 1.09 N N
37 OD1 H7 O H sing 0.97 N N
38 C1' H8 C H sing 1.09 N N
39 C2' H9 C H sing 1.09 N N
40 C3' H10 C H sing 1.09 N N
41 C3U H11 C H sing 1.09 N N
42 C3U H12 C H sing 1.09 N N
43 C3U H13 C H sing 1.09 N N
44 C4' H14 C H sing 1.09 N N
45 C5 H15 C H sing 1.08 N N
46 C5' H16 C H sing 1.09 N N
47 C5' H17 C H sing 1.09 N N
48 C6 H18 C H sing 1.08 N N
49 N3S H19 N H sing 0.97 N N
50 O2' H20 O H sing 0.97 N N
51 O3' H21 O H sing 0.97 N N