Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GBA    

Bonds between two atoms of the molecule

Total Number of Bonds: 34


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N6 C6 N C sing 1.38 N N
2 N1 C6 N C doub 1.33 N Y
3 N1 C2 N C sing 1.32 N Y
4 C6 C5 C C sing 1.41 N Y
5 C2 N3 C N doub 1.32 N Y
6 C5 N7 C N sing 1.36 N Y
7 C5 C4 C C doub 1.4 N Y
8 N7 C8 N C doub 1.3 N Y
9 N3 C4 N C sing 1.33 N Y
10 C4 N9 C N sing 1.37 N Y
11 C8 N9 C N sing 1.36 N Y
12 C8 BR8 C BR sing 1.89 N N
13 N9 C1' N C sing 1.46 N N
14 O5' C5' O C sing 1.43 N N
15 O4' C1' O C sing 1.44 N N
16 O4' C4' O C sing 1.44 N N
17 C1' C2' C C sing 1.55 N N
18 C5' C4' C C sing 1.53 N N
19 C4' C3' C C sing 1.54 N N
20 C2' C3' C C sing 1.55 N N
21 C2' O2' C O sing 1.43 N N
22 C3' O3' C O sing 1.43 N N
23 O2' H1 O H sing 0.97 N N
24 C2' H2 C H sing 1.09 N N
25 C3' H3 C H sing 1.09 N N
26 O3' H4 O H sing 0.97 N N
27 C4' H5 C H sing 1.09 N N
28 C5' H6 C H sing 1.09 N N
29 C5' H7 C H sing 1.09 N N
30 O5' H8 O H sing 0.97 N N
31 C1' H9 C H sing 1.09 N N
32 C2 H10 C H sing 1.08 N N
33 N6 H11 N H sing 0.97 N N
34 N6 H12 N H sing 0.97 N N