Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GBX    

Bonds between two atoms of the molecule

Total Number of Bonds: 74


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C2 O C doub 1.21 N N
2 C1 CA1 C C sing 1.51 N N
3 C1 O11 C O doub 1.21 N N
4 C1 O12 C O sing 1.34 N N
5 C2 N3 C N sing 1.35 N N
6 C2 CA2 C C sing 1.51 N N
7 C3 CA3 C C sing 1.51 N N
8 C3 O31 C O doub 1.21 N N
9 C3 O32 C O sing 1.34 N N
10 N1 CA1 N C sing 1.47 N N
11 N1 HN11 N H sing 1.01 N N
12 N1 HN12 N H sing 1.01 N N
13 C7 O7 C O doub 1.21 N N
14 C7 C8 C C sing 1.5 N N
15 C7 C2' C C sing 1.48 N N
16 N2 CD1 N C sing 1.35 N N
17 N2 CA2 N C sing 1.46 N N
18 N2 HN2 N H sing 0.97 N N
19 N3 CA3 N C sing 1.47 N N
20 N3 HN3 N H sing 0.97 N N
21 CA1 CB1 C C sing 1.53 N N
22 CA1 HA1 C H sing 1.09 N N
23 O12 H12 O H sing 0.97 N N
24 CB1 CG1 C C sing 1.53 N N
25 CB1 HB11 C H sing 1.09 N N
26 CB1 HB12 C H sing 1.09 N N
27 CG1 CD1 C C sing 1.51 N N
28 CG1 HG11 C H sing 1.09 N N
29 CG1 HG12 C H sing 1.09 N N
30 CD1 OE1 C O doub 1.21 N N
31 CA2 CB2 C C sing 1.53 N N
32 CA2 HA2 C H sing 1.09 N N
33 CB2 SG2 C S sing 1.81 N N
34 CB2 HB21 C H sing 1.09 N N
35 CB2 HB22 C H sing 1.09 N N
36 SG2 C10 S C sing 1.81 N N
37 CA3 HA31 C H sing 1.09 N N
38 CA3 HA32 C H sing 1.09 N N
39 O32 H32 O H sing 0.97 N N
40 C8 O8 C O doub 1.21 N N
41 C8 C9 C C sing 1.52 N N
42 C9 O9 C O sing 1.43 N N
43 C9 C10 C C sing 1.53 N N
44 C9 H9 C H sing 1.09 N N
45 O9 HO9 O H sing 0.97 N N
46 C10 C3' C C sing 1.5 N N
47 C10 H10 C H sing 1.09 N N
48 C1' C2' C C sing 1.4 N Y
49 C1' C11 C C doub 1.39 N Y
50 C1' H1' C H sing 1.08 N N
51 C2' C3' C C doub 1.39 N Y
52 C3' C13 C C sing 1.4 N Y
53 C4' C5' C C doub 1.35 N Y
54 C4' C13 C C sing 1.46 N Y
55 C4' H4' C H sing 1.08 N N
56 C5' C16 C C sing 1.42 N Y
57 C5' H5' C H sing 1.08 N N
58 C6' C7' C C doub 1.38 N Y
59 C6' C16 C C sing 1.4 N Y
60 C6' H6' C H sing 1.08 N N
61 C7' C8' C C sing 1.38 N Y
62 C7' H7' C H sing 1.08 N N
63 C8' C18 C C doub 1.4 N Y
64 C8' H8' C H sing 1.08 N N
65 C9' C9A C C doub 1.35 N Y
66 C9' C18 C C sing 1.46 N Y
67 C9' H9' C H sing 1.08 N N
68 C9A C11 C C sing 1.46 N Y
69 C9A H9A C H sing 1.08 N N
70 C11 C12 C C sing 1.42 N Y
71 C12 C13 C C doub 1.41 N Y
72 C12 C17 C C sing 1.41 N Y
73 C16 C17 C C doub 1.41 N Y
74 C17 C18 C C sing 1.42 N Y