Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GDM    

Bonds between two atoms of the molecule

Total Number of Bonds: 81


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C1 O C doub 1.22 N N
2 O2 C6 O C sing 1.43 N N
3 O2 C23 O C sing 1.43 N N
4 O3 C7 O C sing 1.45 N N
5 O3 C24 O C sing 1.35 N N
6 O4 C24 O C doub 1.21 N N
7 O5 C11 O C sing 1.43 N N
8 O5 HO5 O H sing 0.97 N N
9 O6 C12 O C sing 1.43 N N
10 O6 C27 O C sing 1.43 N N
11 O7 C17 O C sing 1.35 N N
12 O7 C29 O C sing 1.43 N N
13 O8 C18 O C doub 1.22 N N
14 O9 C21 O C doub 1.22 N N
15 N1 C1 N C sing 1.33 N N
16 N1 C20 N C sing 1.38 N N
17 N1 HN1 N H sing 0.98 N N
18 N2 C24 N C sing 1.35 N N
19 N2 HN21 N H sing 0.97 N N
20 N2 HN22 N H sing 0.97 N N
21 C1 C2 C C sing 1.46 N N
22 C2 C3 C C doub 1.35 E N
23 C2 C22 C C sing 1.5 N N
24 C3 C4 C C sing 1.45 N N
25 C3 H3 C H sing 1.09 N N
26 C4 C5 C C doub 1.34 Z N
27 C4 H4 C H sing 1.08 N N
28 C5 C6 C C sing 1.5 N N
29 C5 H5 C H sing 1.08 N N
30 C6 C7 C C sing 1.53 N N
31 C6 H6 C H sing 1.09 N N
32 C7 C8 C C sing 1.51 N N
33 C7 H7 C H sing 1.09 N N
34 C8 C9 C C doub 1.31 E N
35 C8 C25 C C sing 1.51 N N
36 C9 C10 C C sing 1.5 N N
37 C9 H9 C H sing 1.09 N N
38 C10 C11 C C sing 1.54 N N
39 C10 C26 C C sing 1.53 N N
40 C10 H10 C H sing 1.09 N N
41 C11 C12 C C sing 1.53 N N
42 C11 H11 C H sing 1.09 N N
43 C12 C13 C C sing 1.53 N N
44 C12 H12 C H sing 1.09 N N
45 C13 C14 C C sing 1.53 N N
46 C13 H131 C H sing 1.09 N N
47 C13 H132 C H sing 1.09 N N
48 C14 C15 C C sing 1.53 N N
49 C14 C28 C C sing 1.53 N N
50 C14 H14 C H sing 1.09 N N
51 C15 C16 C C sing 1.51 N N
52 C15 H151 C H sing 1.09 N N
53 C15 H152 C H sing 1.09 N N
54 C16 C17 C C doub 1.35 N N
55 C16 C21 C C sing 1.47 N N
56 C17 C18 C C sing 1.49 N N
57 C18 C19 C C sing 1.46 N N
58 C19 C20 C C doub 1.35 N N
59 C19 H19 C H sing 1.08 N N
60 C20 C21 C C sing 1.49 N N
61 C22 H221 C H sing 1.09 N N
62 C22 H222 C H sing 1.09 N N
63 C22 H223 C H sing 1.09 N N
64 C23 H231 C H sing 1.09 N N
65 C23 H232 C H sing 1.09 N N
66 C23 H233 C H sing 1.09 N N
67 C25 H251 C H sing 1.09 N N
68 C25 H252 C H sing 1.09 N N
69 C25 H253 C H sing 1.09 N N
70 C26 H261 C H sing 1.09 N N
71 C26 H262 C H sing 1.09 N N
72 C26 H263 C H sing 1.09 N N
73 C27 H271 C H sing 1.09 N N
74 C27 H272 C H sing 1.09 N N
75 C27 H273 C H sing 1.09 N N
76 C28 H281 C H sing 1.09 N N
77 C28 H282 C H sing 1.09 N N
78 C28 H283 C H sing 1.09 N N
79 C29 H291 C H sing 1.09 N N
80 C29 H292 C H sing 1.09 N N
81 C29 H293 C H sing 1.09 N N