Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GGZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N3 C N doub 1.35 N Y
2 C2 N1 C N sing 1.35 N Y
3 C2 H2 C H sing 1.08 N N
4 C4 N9 C N sing 1.37 N N
5 C4 C5 C C doub 1.39 N Y
6 C4 N3 C N sing 1.34 N Y
7 C5 N7 C N sing 1.37 N N
8 C5 C6 C C sing 1.39 N Y
9 C6 N6 C N sing 1.41 N N
10 C6 N1 C N doub 1.35 N Y
11 C8 N7 C N doub 1.32 N N
12 C8 N9 C N sing 1.37 N N
13 C8 H8 C H sing 1.08 N N
14 O3P P1 O P sing 1.62 N N
15 O3P HO3P O H sing 0.98 N N
16 P1 O3' P O sing 1.62 N N
17 P1 O1P P O doub 1.5 N N
18 P1 O2' P O sing 1.62 N N
19 O2' C2' O C sing 1.44 N N
20 O3' C3' O C sing 1.43 N N
21 C3' C4' C C sing 1.52 N N
22 C3' C2' C C sing 1.52 N N
23 C3' H3' C H sing 1.1 N N
24 C4' O4' C O sing 1.43 N N
25 C4' C5' C C sing 1.52 N N
26 C4' H4' C H sing 1.1 N N
27 C5' O5' C O sing 1.42 N N
28 C5' H5'1 C H sing 1.09 N N
29 C5' H5'2 C H sing 1.09 N N
30 O5' P2 O P sing 1.62 N N
31 P2 O4P P O doub 1.5 N N
32 P2 O6P P O sing 1.62 N N
33 P2 O5P P O sing 1.62 N N
34 O5P HO5P O H sing 0.98 N N
35 O6P S2 O S sing 1.63 N N
36 S2 OS1 S O doub 1.45 N N
37 S2 OS3 S O doub 1.45 N N
38 S2 OS2 S O sing 1.63 N N
39 OS2 HOS2 O H sing 0.99 N N
40 C2' C1' C C sing 1.52 N N
41 C2' H2' C H sing 1.09 N N
42 C1' O4' C O sing 1.44 N N
43 C1' N9 C N sing 1.46 N N
44 C1' H1' C H sing 1.09 N N
45 N6 HN61 N H sing 1.0 N N
46 N6 HN62 N H sing 1.0 N N