Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : GKB    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C9 C8 C C sing 1.51 N N
2 C8 N2 C N sing 1.34 N Y
3 C8 C7 C C doub 1.35 N Y
4 N2 C10 N C doub 1.3 N Y
5 C7 N1 C N sing 1.37 N Y
6 C10 N1 C N sing 1.36 N Y
7 N1 C6 N C sing 1.4 N N
8 C6 C11 C C doub 1.39 N Y
9 C6 C5 C C sing 1.39 N Y
10 C11 C1 C C sing 1.39 N Y
11 N C1 N C sing 1.4 N N
12 N C N C sing 1.35 N N
13 C5 C3 C C doub 1.38 N Y
14 C1 C2 C C doub 1.39 N Y
15 C24 C23 C C doub 1.38 N Y
16 C24 C12 C C sing 1.4 N Y
17 C23 C15 C C sing 1.39 N Y
18 C15 C16 C C sing 1.51 N N
19 C15 C14 C C doub 1.38 N Y
20 C12 C C C sing 1.48 N N
21 C12 C13 C C doub 1.39 N Y
22 C16 C17 C C sing 1.54 N N
23 C O C O doub 1.21 N N
24 C14 C13 C C sing 1.38 N Y
25 C14 C22 C C sing 1.51 N N
26 C3 C2 C C sing 1.38 N Y
27 C3 C4 C C sing 1.51 N N
28 C22 C17 C C sing 1.54 N N
29 C17 N3 C N sing 1.47 N N
30 F C4 F C sing 1.4 N N
31 C4 F2 C F sing 1.4 N N
32 C4 F1 C F sing 1.4 N N
33 N3 C18 N C sing 1.4 N N
34 C19 C18 C C doub 1.39 N Y
35 C19 N4 C N sing 1.32 N Y
36 C18 C21 C C sing 1.39 N Y
37 N4 C20 N C doub 1.32 N Y
38 C21 N5 C N doub 1.32 N Y
39 C20 N5 C N sing 1.32 N Y
40 N3 H1 N H sing 0.97 N N
41 C5 H2 C H sing 1.08 N N
42 C7 H3 C H sing 1.08 N N
43 C10 H4 C H sing 1.08 N N
44 C13 H5 C H sing 1.08 N N
45 C17 H6 C H sing 1.09 N N
46 C20 H7 C H sing 1.08 N N
47 C21 H8 C H sing 1.08 N N
48 C22 H9 C H sing 1.09 N N
49 C22 H10 C H sing 1.09 N N
50 C24 H11 C H sing 1.08 N N
51 N H12 N H sing 0.97 N N
52 C11 H13 C H sing 1.08 N N
53 C16 H14 C H sing 1.09 N N
54 C16 H15 C H sing 1.09 N N
55 C19 H16 C H sing 1.08 N N
56 C2 H17 C H sing 1.08 N N
57 C23 H18 C H sing 1.08 N N
58 C9 H19 C H sing 1.09 N N
59 C9 H20 C H sing 1.09 N N
60 C9 H21 C H sing 1.09 N N