Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GVD    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAL CAM C C sing 1.5 N N
2 CAL CBB C C sing 1.51 N N
3 CAM CBB C C sing 1.51 N N
4 CBB CAX C C sing 1.52 N N
5 CAX CAK C C doub 1.37 N N
6 CAX NAS C N sing 1.36 N N
7 NAS NAN N N sing 1.34 N N
8 CAK CAV C C sing 1.38 N N
9 NAN CAV N C doub 1.31 N N
10 CAV NAR C N sing 1.4 N N
11 NAR C6 N C sing 1.42 N N
12 C6 N1 C N doub 1.35 N N
13 C6 C5 C C sing 1.39 N N
14 C5 CAJ C C doub 1.41 N N
15 CAJ CAD C C sing 1.39 N N
16 CAD CAC C C doub 1.39 N N
17 CAC CAI C C sing 1.4 N N
18 C5 C4 C C sing 1.4 N N
19 CAI C4 C C doub 1.39 N N
20 C4 N3 C N sing 1.34 N N
21 N1 C2 N C sing 1.34 N N
22 N3 C2 N C doub 1.35 N N
23 C2 NAQ C N sing 1.4 N N
24 NAQ CAU N C doub 1.3 N N
25 CAU CAG C C sing 1.48 N N
26 CAG CAE C C doub 1.34 N N
27 CAB NAA C N trip 1.16 N N
28 CAU CAH C C sing 1.48 N N
29 CAF CAH C C doub 1.34 N N
30 CAB CA0 C C sing 1.46 N N
31 CAE CAT C C sing 1.5 N N
32 CAF CAT C C sing 1.5 N N
33 CA0 CAT C C sing 1.53 N N
34 CAL HAL1 C H sing 1.08 N N
35 CAL HAL2 C H sing 1.08 N N
36 CAM HAM1 C H sing 1.08 N N
37 CAM HAM2 C H sing 1.08 N N
38 CBB HBB C H sing 1.09 N N
39 CAK HAK C H sing 1.08 N N
40 NAS HAS N H sing 1.01 N N
41 NAR HAR N H sing 1.01 N N
42 CAJ HAJ C H sing 1.09 N N
43 CAD HAD C H sing 1.09 N N
44 CAC HAC C H sing 1.09 N N
45 CAI HAI C H sing 1.09 N N
46 CAG HAG C H sing 1.08 N N
47 CAH HAH C H sing 1.08 N N
48 CAE HAE C H sing 1.09 N N
49 CAT HAT C H sing 1.1 N N
50 CA0 HA01 C H sing 1.08 N N
51 CA0 HA02 C H sing 1.08 N N
52 CAF HAF C H sing 1.09 N N