Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
H05
Bonds between two atoms of the molecule
Total Number of Bonds: 32
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
N2
C1
N
C
sing
1.37
N
Y
2
N3
C1
N
C
doub
1.32
N
Y
3
C1
C8
C
C
sing
1.47
N
Y
4
N4
N2
N
N
sing
1.4
N
Y
5
N2
C5
N
C
sing
1.36
N
Y
6
C7
N3
C
N
sing
1.33
N
Y
7
N4
C7
N
C
doub
1.32
N
Y
8
C12
C5
C
C
sing
1.51
N
N
9
C5
N6
C
N
doub
1.3
N
Y
10
N6
C9
N
C
sing
1.36
N
Y
11
N10
C7
N
C
sing
1.39
N
N
12
C8
C9
C
C
doub
1.41
N
Y
13
C8
C11
C
C
sing
1.39
N
Y
14
C9
C13
C
C
sing
1.4
N
Y
15
N10
HN10
N
H
sing
0.97
N
N
16
N10
HN1A
N
H
sing
0.97
N
N
17
C11
C15
C
C
doub
1.37
N
Y
18
C11
H11
C
H
sing
1.08
N
N
19
C12
C14
C
C
sing
1.53
N
N
20
C12
H12
C
H
sing
1.09
N
N
21
C12
H12A
C
H
sing
1.09
N
N
22
C13
C16
C
C
doub
1.37
N
Y
23
C13
H13
C
H
sing
1.08
N
N
24
C14
C17
C
C
sing
1.53
N
N
25
C14
H14
C
H
sing
1.09
N
N
26
C14
H14A
C
H
sing
1.09
N
N
27
C15
C16
C
C
sing
1.39
N
Y
28
C15
H15
C
H
sing
1.08
N
N
29
C16
H16
C
H
sing
1.08
N
N
30
C17
H17
C
H
sing
1.09
N
N
31
C17
H17A
C
H
sing
1.09
N
N
32
C17
H17B
C
H
sing
1.09
N
N