Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HD3    

Bonds between two atoms of the molecule

Total Number of Bonds: 36


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O19 C14 O C sing 1.43 N N
2 C02 C01 C C doub 1.34 N Y
3 C02 N03 C N sing 1.37 N Y
4 O20 C13 O C sing 1.43 N N
5 C01 C05 C C sing 1.46 N Y
6 C12 N03 C N sing 1.46 N N
7 C12 C13 C C sing 1.55 N N
8 C12 O16 C O sing 1.44 N N
9 C14 C13 C C sing 1.55 N N
10 C14 C15 C C sing 1.54 N N
11 N03 C04 N C sing 1.36 N Y
12 C15 O16 C O sing 1.44 N N
13 C15 C17 C C sing 1.53 N N
14 C05 C04 C C doub 1.4 N Y
15 C05 C06 C C sing 1.41 N N
16 C04 N10 C N sing 1.34 N N
17 C17 O18 C O sing 1.43 N N
18 O07 C06 O C doub 1.22 N N
19 C06 N08 C N sing 1.35 N N
20 N10 C09 N C doub 1.31 N N
21 N08 C09 N C sing 1.36 N N
22 C09 N11 C N sing 1.37 N N
23 C01 H1 C H sing 1.08 N N
24 C02 H2 C H sing 1.08 N N
25 C12 H3 C H sing 1.09 N N
26 C13 H4 C H sing 1.09 N N
27 C14 H5 C H sing 1.09 N N
28 C15 H6 C H sing 1.09 N N
29 C17 H7 C H sing 1.09 N N
30 C17 H8 C H sing 1.09 N N
31 N08 H9 N H sing 0.97 N N
32 N11 H10 N H sing 0.97 N N
33 N11 H11 N H sing 0.97 N N
34 O18 H12 O H sing 0.97 N N
35 O19 H13 O H sing 0.97 N N
36 O20 H14 O H sing 0.97 N N