Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HDI    

Bonds between two atoms of the molecule

Total Number of Bonds: 31


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C12 O4 C O sing 1.45 N N
2 C12 H121 C H sing 1.09 N N
3 C12 H122 C H sing 1.09 N N
4 C12 H123 C H sing 1.09 N N
5 C11 O3 C O doub 1.21 N N
6 C11 O4 C O sing 1.34 N N
7 C11 C10 C C sing 1.51 N N
8 C10 C9 C C sing 1.53 N N
9 C10 H101 C H sing 1.09 N N
10 C10 H102 C H sing 1.09 N N
11 N1 O2 N O sing 1.41 N N
12 N1 C7 N C doub 1.29 N N
13 O2 C9 O C sing 1.44 N N
14 C9 C8 C C sing 1.55 N N
15 C9 HC9 C H sing 1.09 N N
16 C8 C7 C C sing 1.51 N N
17 C8 HC81 C H sing 1.09 N N
18 C8 HC82 C H sing 1.09 N N
19 C7 C6 C C sing 1.48 N N
20 O1 C3 O C sing 1.36 N N
21 O1 HO1 O H sing 0.97 N N
22 C5 C6 C C doub 1.4 N Y
23 C5 C4 C C sing 1.38 N Y
24 C5 HC5 C H sing 1.08 N N
25 C6 C1 C C sing 1.4 N Y
26 C1 C2 C C doub 1.38 N Y
27 C1 HC1 C H sing 1.08 N N
28 C2 C3 C C sing 1.39 N Y
29 C2 HC2 C H sing 1.08 N N
30 C3 C4 C C doub 1.39 N Y
31 C4 HC4 C H sing 1.08 N N