Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HKO    

Bonds between two atoms of the molecule

Total Number of Bonds: 84


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O43 C43 O C sing 1.43 N N
2 O23 C23 O C sing 1.43 N N
3 C33 C43 C C sing 1.52 N N
4 C33 N33 C N sing 1.47 N N
5 C33 C23 C C sing 1.52 N N
6 C93 N33 C N sing 1.47 N N
7 C43 C83 C C sing 1.52 N N
8 C43 C53 C C sing 1.52 N N
9 C23 C13 C C sing 1.52 N N
10 C53 O53 C O sing 1.42 N N
11 N1 C5 N C doub 1.32 N Y
12 N1 C4 N C sing 1.32 N Y
13 O53 C13 O C sing 1.41 N N
14 C13 O62 C O sing 1.43 N N
15 C5 C1 C C sing 1.38 N Y
16 C4 C3 C C doub 1.38 N Y
17 O62 C62 O C sing 1.43 N N
18 O1 S1 O S doub 1.42 N N
19 C1 S1 C S sing 1.76 N N
20 C1 C2 C C doub 1.39 N Y
21 N12 S1 N S sing 1.66 N N
22 N12 C12 N C sing 1.47 N N
23 S1 O2 S O doub 1.42 N N
24 C3 C2 C C sing 1.39 N Y
25 C62 C12 C C sing 1.53 N N
26 C62 C52 C C sing 1.53 N N
27 O52 C52 O C sing 1.43 N N
28 C12 C22 C C sing 1.53 N N
29 C52 C42 C C sing 1.53 N N
30 C22 C32 C C sing 1.53 N N
31 C42 C32 C C sing 1.53 N N
32 C42 O11 C O sing 1.43 N N
33 C32 N32 C N sing 1.47 N N
34 C11 O11 C O sing 1.43 N N
35 C11 O51 C O sing 1.43 N N
36 C11 C21 C C sing 1.53 N N
37 N21 C21 N C sing 1.47 N N
38 O51 C51 O C sing 1.43 N N
39 C21 C31 C C sing 1.53 N N
40 C51 C61 C C sing 1.53 N N
41 C51 C41 C C sing 1.53 N N
42 C31 C41 C C sing 1.53 N N
43 C61 N61 C N sing 1.47 N N
44 C2 H1 C H sing 1.08 N N
45 C3 H2 C H sing 1.08 N N
46 C4 H3 C H sing 1.08 N N
47 C5 H4 C H sing 1.08 N N
48 C11 H5 C H sing 1.09 N N
49 C12 H6 C H sing 1.09 N N
50 C13 H7 C H sing 1.09 N N
51 C21 H8 C H sing 1.09 N N
52 C22 H9 C H sing 1.09 N N
53 C22 H10 C H sing 1.09 N N
54 C23 H11 C H sing 1.09 N N
55 C31 H12 C H sing 1.09 N N
56 C31 H13 C H sing 1.09 N N
57 C32 H14 C H sing 1.09 N N
58 C33 H15 C H sing 1.09 N N
59 C41 H16 C H sing 1.09 N N
60 C41 H17 C H sing 1.09 N N
61 C42 H18 C H sing 1.09 N N
62 C51 H19 C H sing 1.09 N N
63 C52 H20 C H sing 1.09 N N
64 C53 H21 C H sing 1.09 N N
65 C61 H23 C H sing 1.09 N N
66 C61 H24 C H sing 1.09 N N
67 C62 H25 C H sing 1.09 N N
68 C83 H26 C H sing 1.09 N N
69 C83 H27 C H sing 1.09 N N
70 C93 H29 C H sing 1.09 N N
71 C93 H30 C H sing 1.09 N N
72 C93 H31 C H sing 1.09 N N
73 N12 H32 N H sing 0.97 N N
74 N21 H33 N H sing 1.01 N N
75 N21 H34 N H sing 1.01 N N
76 N32 H36 N H sing 1.01 N N
77 N32 H37 N H sing 1.01 N N
78 N33 H39 N H sing 1.01 N N
79 N61 H41 N H sing 1.01 N N
80 N61 H42 N H sing 1.01 N N
81 O23 H44 O H sing 0.97 N N
82 O43 H45 O H sing 0.97 N N
83 O52 H46 O H sing 0.97 N N
84 C53 C83 C C sing 1.54 N N