Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : HZ7    

Bonds between two atoms of the molecule

Total Number of Bonds: 100


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O14 P3 O P doub 1.48 N N
2 O12 P2 O P doub 1.48 N N
3 O10 P2 O P sing 1.61 N N
4 P2 O11 P O sing 1.61 N N
5 P2 O2 P O sing 1.61 N N
6 C19 C18 C C sing 1.53 N N
7 P3 O13 P O sing 1.61 N N
8 P3 O4 P O sing 1.61 N N
9 P3 O15 P O sing 1.61 N N
10 C18 C17 C C sing 1.53 N N
11 O4 C3 O C sing 1.43 N N
12 O2 C1 O C sing 1.43 N N
13 C2 O5 C O sing 1.43 N N
14 C2 C3 C C sing 1.53 N N
15 C2 C1 C C sing 1.53 N N
16 C3 C4 C C sing 1.53 N N
17 O1 C6 O C sing 1.43 N N
18 C1 C6 C C sing 1.53 N N
19 C17 C16 C C sing 1.53 N N
20 O7 P1 O P doub 1.48 N N
21 C16 C15 C C sing 1.53 N N
22 C6 C5 C C sing 1.53 N N
23 C4 C5 C C sing 1.53 N N
24 C4 O6 C O sing 1.43 N N
25 P1 O8 P O sing 1.61 N N
26 P1 O3 P O sing 1.61 N N
27 P1 O9 P O sing 1.61 N N
28 C5 O3 C O sing 1.43 N N
29 C15 C14 C C sing 1.53 N N
30 O8 C7 O C sing 1.43 N N
31 C11 C14 C C sing 1.53 N N
32 C11 C10 C C sing 1.53 N N
33 C7 C8 C C sing 1.53 N N
34 O17 C10 O C sing 1.43 N N
35 O17 C8 O C sing 1.43 N N
36 C10 O18 C O sing 1.43 N N
37 C8 C9 C C sing 1.53 N N
38 C9 O16 C O sing 1.43 N N
39 O16 C12 O C sing 1.43 N N
40 C25 C24 C C sing 1.53 N N
41 O19 C12 O C sing 1.43 N N
42 C12 C13 C C sing 1.53 N N
43 C24 C23 C C sing 1.53 N N
44 C13 C20 C C sing 1.53 N N
45 C22 C23 C C sing 1.53 N N
46 C22 C21 C C sing 1.53 N N
47 C20 C21 C C sing 1.53 N N
48 C2 H1 C H sing 1.09 N N
49 C3 H2 C H sing 1.09 N N
50 C4 H3 C H sing 1.09 N N
51 C5 H4 C H sing 1.09 N N
52 C6 H5 C H sing 1.09 N N
53 C1 H6 C H sing 1.09 N N
54 C10 H7 C H sing 1.09 N N
55 C11 H8 C H sing 1.09 N N
56 C11 H9 C H sing 1.09 N N
57 C12 H10 C H sing 1.09 N N
58 C13 H11 C H sing 1.09 N N
59 C13 H12 C H sing 1.09 N N
60 C14 H13 C H sing 1.09 N N
61 C14 H14 C H sing 1.09 N N
62 C15 H15 C H sing 1.09 N N
63 C15 H16 C H sing 1.09 N N
64 C16 H17 C H sing 1.09 N N
65 C16 H18 C H sing 1.09 N N
66 C17 H19 C H sing 1.09 N N
67 C17 H20 C H sing 1.09 N N
68 C18 H21 C H sing 1.09 N N
69 C18 H22 C H sing 1.09 N N
70 C19 H23 C H sing 1.09 N N
71 C19 H24 C H sing 1.09 N N
72 C19 H25 C H sing 1.09 N N
73 C20 H26 C H sing 1.09 N N
74 C20 H27 C H sing 1.09 N N
75 C21 H28 C H sing 1.09 N N
76 C21 H29 C H sing 1.09 N N
77 C22 H30 C H sing 1.09 N N
78 C22 H31 C H sing 1.09 N N
79 C23 H32 C H sing 1.09 N N
80 C23 H33 C H sing 1.09 N N
81 C24 H34 C H sing 1.09 N N
82 C24 H35 C H sing 1.09 N N
83 C25 H36 C H sing 1.09 N N
84 C25 H37 C H sing 1.09 N N
85 C25 H38 C H sing 1.09 N N
86 C7 H39 C H sing 1.09 N N
87 C7 H40 C H sing 1.09 N N
88 C8 H41 C H sing 1.09 N N
89 C9 H42 C H sing 1.09 N N
90 C9 H43 C H sing 1.09 N N
91 O1 H44 O H sing 0.97 N N
92 O10 H45 O H sing 0.97 N N
93 O11 H46 O H sing 0.97 N N
94 O13 H47 O H sing 0.97 N N
95 O15 H48 O H sing 0.97 N N
96 O18 H49 O H sing 0.97 N N
97 O19 H50 O H sing 0.97 N N
98 O5 H51 O H sing 0.97 N N
99 O6 H52 O H sing 0.97 N N
100 O9 H53 O H sing 0.97 N N