Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : IYB    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O07 P01 O P doub 1.48 N N
2 C15 O05 C O sing 1.43 N N
3 C15 C1 C C sing 1.53 N N
4 P01 O05 P O sing 1.61 N N
5 P01 O03 P O sing 1.61 N N
6 C1 C2 C C sing 1.53 N N
7 C7 C8 C C sing 1.53 N N
8 C7 C6 C C sing 1.53 N N
9 C9 C8 C C sing 1.53 N N
10 C9 C10 C C sing 1.53 N N
11 C2 C3 C C sing 1.53 N N
12 C4 C3 C C sing 1.53 N N
13 C4 C5 C C sing 1.53 N N
14 C6 C5 C C sing 1.53 N N
15 P01 O1 P O sing 1.61 N N
16 C2 H1 C H sing 1.09 N N
17 C2 H2 C H sing 1.09 N N
18 C3 H3 C H sing 1.09 N N
19 C3 H4 C H sing 1.09 N N
20 C4 H5 C H sing 1.09 N N
21 C4 H6 C H sing 1.09 N N
22 C5 H7 C H sing 1.09 N N
23 C5 H8 C H sing 1.09 N N
24 C6 H9 C H sing 1.09 N N
25 C6 H10 C H sing 1.09 N N
26 C7 H11 C H sing 1.09 N N
27 C7 H12 C H sing 1.09 N N
28 C8 H13 C H sing 1.09 N N
29 C8 H14 C H sing 1.09 N N
30 C15 H15 C H sing 1.09 N N
31 C15 H16 C H sing 1.09 N N
32 O03 H17 O H sing 0.97 N N
33 C1 H18 C H sing 1.09 N N
34 C1 H19 C H sing 1.09 N N
35 C9 H20 C H sing 1.09 N N
36 C9 H21 C H sing 1.09 N N
37 C10 H22 C H sing 1.09 N N
38 C10 H23 C H sing 1.09 N N
39 C10 H24 C H sing 1.09 N N
40 O1 H25 O H sing 0.97 N N