Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : J4O    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 C21 C C sing 1.53 N N
2 C21 C17 C C sing 1.51 N N
3 C11 C10 C C doub 1.4 N Y
4 C11 C12 C C sing 1.37 N Y
5 N15 C10 N C sing 1.36 N Y
6 N15 C14 N C doub 1.31 N Y
7 O25 C23 O C doub 1.21 N N
8 C10 C9 C C sing 1.41 N Y
9 C12 C7 C C doub 1.39 N Y
10 C17 C18 C C sing 1.42 N Y
11 C17 C16 C C doub 1.36 N Y
12 C23 C24 C C sing 1.51 N N
13 C23 C18 C C sing 1.47 N N
14 C18 C19 C C doub 1.38 N Y
15 C14 C16 C C sing 1.47 N N
16 C14 N13 C N sing 1.37 N Y
17 C16 N20 C N sing 1.38 N Y
18 C4 C5 C C sing 1.53 N N
19 C4 N3 C N sing 1.47 N N
20 C7 C8 C C sing 1.39 N Y
21 C7 N3 C N sing 1.4 N N
22 C9 N13 C N sing 1.38 N Y
23 C9 C8 C C doub 1.39 N Y
24 C19 N20 C N sing 1.34 N Y
25 C19 C26 C C sing 1.51 N N
26 C5 O6 C O sing 1.43 N N
27 N3 C2 N C sing 1.47 N N
28 O6 C1 O C sing 1.43 N N
29 C2 C1 C C sing 1.53 N N
30 C1 H1 C H sing 1.09 N N
31 C1 H2 C H sing 1.09 N N
32 C11 H3 C H sing 1.08 N N
33 C12 H4 C H sing 1.08 N N
34 C2 H5 C H sing 1.09 N N
35 C2 H6 C H sing 1.09 N N
36 C21 H7 C H sing 1.09 N N
37 C21 H8 C H sing 1.09 N N
38 C22 H9 C H sing 1.09 N N
39 C22 H10 C H sing 1.09 N N
40 C22 H11 C H sing 1.09 N N
41 C24 H12 C H sing 1.09 N N
42 C24 H13 C H sing 1.09 N N
43 C24 H14 C H sing 1.09 N N
44 C26 H15 C H sing 1.09 N N
45 C26 H16 C H sing 1.09 N N
46 C26 H17 C H sing 1.09 N N
47 C4 H18 C H sing 1.09 N N
48 C4 H19 C H sing 1.09 N N
49 C5 H20 C H sing 1.09 N N
50 C5 H21 C H sing 1.09 N N
51 C8 H22 C H sing 1.08 N N
52 N13 H23 N H sing 0.97 N N
53 N20 H25 N H sing 0.97 N N