Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : J7I    

Bonds between two atoms of the molecule

Total Number of Bonds: 82


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C29 C28 C C sing 1.51 N N
2 C27 C28 C C doub 1.38 N Y
3 C27 C26 C C sing 1.38 N Y
4 C28 C11 C C sing 1.39 N Y
5 N4 C7 N C sing 1.39 N N
6 C7 C8 C C doub 1.39 N Y
7 C7 N3 C N sing 1.33 N Y
8 C8 C9 C C sing 1.39 N Y
9 N3 C6 N C doub 1.33 N Y
10 C26 C13 C C doub 1.39 N Y
11 C9 N5 C N sing 1.39 N N
12 C9 N6 C N doub 1.33 N Y
13 C6 N6 C N sing 1.33 N Y
14 C6 C5 C C sing 1.48 N N
15 C11 N1 C N sing 1.4 N N
16 C11 C12 C C doub 1.39 N Y
17 N2 C5 N C sing 1.33 N Y
18 N2 C4 N C doub 1.3 N Y
19 C5 C10 C C doub 1.35 N Y
20 N1 C4 N C sing 1.39 N N
21 N1 C3 N C sing 1.47 N N
22 C4 S1 C S sing 1.76 N Y
23 C3 C2 C C sing 1.53 N N
24 C10 S1 C S sing 1.76 N Y
25 C13 C12 C C sing 1.39 N Y
26 C13 C14 C C sing 1.48 N N
27 C1 C2 C C sing 1.53 N N
28 C14 C25 C C doub 1.39 N Y
29 C14 C15 C C sing 1.39 N Y
30 C25 C23 C C sing 1.39 N Y
31 C24 O3 C O sing 1.43 N N
32 C15 C16 C C doub 1.38 N Y
33 C23 O3 C O sing 1.36 N N
34 C23 C17 C C doub 1.39 N Y
35 C20 N8 C N sing 1.47 N N
36 C19 N8 C N sing 1.47 N N
37 C19 C18 C C sing 1.53 N N
38 C16 C17 C C sing 1.38 N Y
39 C17 S2 C S sing 1.76 N N
40 N8 C21 N C sing 1.47 N N
41 C21 C22 C C sing 1.53 N N
42 C18 N7 C N sing 1.47 N N
43 N7 S2 N S sing 1.66 N N
44 N7 C22 N C sing 1.47 N N
45 S2 O2 S O doub 1.42 N N
46 S2 O1 S O doub 1.42 N N
47 C8 H1 C H sing 1.08 N N
48 C10 H2 C H sing 1.08 N N
49 C15 H3 C H sing 1.08 N N
50 C20 H4 C H sing 1.09 N N
51 C20 H5 C H sing 1.09 N N
52 C20 H6 C H sing 1.09 N N
53 C21 H7 C H sing 1.09 N N
54 C21 H8 C H sing 1.09 N N
55 C22 H9 C H sing 1.09 N N
56 C22 H10 C H sing 1.09 N N
57 C24 H11 C H sing 1.09 N N
58 C24 H12 C H sing 1.09 N N
59 C24 H13 C H sing 1.09 N N
60 C26 H14 C H sing 1.08 N N
61 C1 H15 C H sing 1.09 N N
62 C1 H16 C H sing 1.09 N N
63 C1 H17 C H sing 1.09 N N
64 C2 H18 C H sing 1.09 N N
65 C2 H19 C H sing 1.09 N N
66 C3 H20 C H sing 1.09 N N
67 C3 H21 C H sing 1.09 N N
68 N4 H22 N H sing 0.97 N N
69 N4 H23 N H sing 0.97 N N
70 N5 H24 N H sing 0.97 N N
71 N5 H25 N H sing 0.97 N N
72 C12 H26 C H sing 1.08 N N
73 C16 H27 C H sing 1.08 N N
74 C18 H28 C H sing 1.09 N N
75 C18 H29 C H sing 1.09 N N
76 C19 H30 C H sing 1.09 N N
77 C19 H31 C H sing 1.09 N N
78 C25 H33 C H sing 1.08 N N
79 C27 H34 C H sing 1.08 N N
80 C29 H35 C H sing 1.09 N N
81 C29 H36 C H sing 1.09 N N
82 C29 H37 C H sing 1.09 N N