Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : J87    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C24 O25 C O sing 1.43 N N
2 C24 C23 C C sing 1.53 N N
3 O25 C26 O C sing 1.43 N N
4 C23 N22 C N sing 1.47 N N
5 C20 C19 C C doub 1.38 N Y
6 C20 C21 C C sing 1.39 N Y
7 O18 C06 O C doub 1.22 N N
8 C19 C04 C C sing 1.39 N Y
9 C26 C27 C C sing 1.53 N N
10 N22 C27 N C sing 1.47 N N
11 N22 C21 N C sing 1.4 N N
12 C21 C28 C C doub 1.39 N Y
13 C06 N05 C N sing 1.35 N N
14 C06 C07 C C sing 1.47 N N
15 C04 N05 C N sing 1.4 N N
16 C04 C03 C C doub 1.39 N Y
17 C08 C07 C C doub 1.37 N Y
18 C08 N09 C N sing 1.31 N Y
19 C28 C03 C C sing 1.38 N Y
20 C07 S17 C S sing 1.76 N Y
21 C03 O02 C O sing 1.36 N N
22 N09 C10 N C doub 1.3 N Y
23 S17 C10 S C sing 1.71 N Y
24 O02 C01 O C sing 1.43 N N
25 C10 C11 C C sing 1.48 N N
26 C11 C16 C C doub 1.4 N Y
27 C11 C12 C C sing 1.4 N Y
28 C16 N15 C N sing 1.32 N Y
29 C12 C13 C C doub 1.38 N Y
30 N15 C14 N C doub 1.32 N Y
31 C13 C14 C C sing 1.38 N Y
32 C13 H131 C H sing 1.08 N N
33 C20 H201 C H sing 1.08 N N
34 C24 H241 C H sing 1.09 N N
35 C24 H242 C H sing 1.09 N N
36 C26 H261 C H sing 1.09 N N
37 C26 H262 C H sing 1.09 N N
38 C28 H281 C H sing 1.08 N N
39 C01 H011 C H sing 1.09 N N
40 C01 H012 C H sing 1.09 N N
41 C01 H013 C H sing 1.09 N N
42 N05 H051 N H sing 0.97 N N
43 C08 H081 C H sing 1.08 N N
44 C12 H121 C H sing 1.08 N N
45 C14 H141 C H sing 1.08 N N
46 C16 H161 C H sing 1.08 N N
47 C19 H191 C H sing 1.08 N N
48 C23 H232 C H sing 1.09 N N
49 C23 H231 C H sing 1.09 N N
50 C27 H272 C H sing 1.09 N N
51 C27 H271 C H sing 1.09 N N