Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JDF    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C2 O C sing 1.43 N N
2 O3 C3 O C sing 1.43 N N
3 C3 C2 C C sing 1.53 N N
4 C3 C4 C C sing 1.53 N N
5 O4 C4 O C sing 1.43 N N
6 C2 C1 C C sing 1.53 N N
7 OAD CAC O C doub 1.21 N N
8 C1 O1 C O sing 1.45 N N
9 C1 O5 C O sing 1.43 N N
10 C4 C5 C C sing 1.53 N N
11 C5 O5 C O sing 1.43 N N
12 C5 C6 C C sing 1.53 N N
13 CAG CAE C C sing 1.55 N N
14 CAC O1 C O sing 1.34 N N
15 CAC CAE C C sing 1.5 N N
16 C6 O6 C O sing 1.43 N N
17 CAE CAH C C sing 1.51 N N
18 CAE CAF C C sing 1.53 N N
19 CAI CAH C C sing 1.53 N N
20 CAI CAJ C C sing 1.54 N N
21 CAH CAS C C sing 1.52 N N
22 CAJ CAK C C sing 1.52 N N
23 CAF CAV C C sing 1.52 N N
24 CAT CAS C C sing 1.52 N N
25 CAN CAK C C sing 1.54 N N
26 CAN CAO C C sing 1.55 N N
27 CAS CAU C C sing 1.54 N N
28 CAS CAR C C sing 1.53 N N
29 CAV CAU C C sing 1.53 N N
30 CAK CAR C C sing 1.52 N N
31 CAK CAL C C sing 1.55 N N
32 CAR CAQ C C sing 1.52 N N
33 CAL CAM C C sing 1.52 N N
34 OAW CAO O C sing 1.43 N N
35 CAO CAM C C sing 1.52 N N
36 CAO CAP C C sing 1.53 N N
37 CAM CAA C C doub 1.31 N N
38 CAP CAQ C C sing 1.52 N N
39 C1 H1 C H sing 1.09 N N
40 C2 H2 C H sing 1.09 N N
41 C3 H3 C H sing 1.09 N N
42 O3 H4 O H sing 0.97 N N
43 C4 H5 C H sing 1.09 N N
44 C5 H6 C H sing 1.09 N N
45 C6 H7 C H sing 1.09 N N
46 C6 H8 C H sing 1.09 N N
47 CAH H9 C H sing 1.12 N N
48 CAI H10 C H sing 1.09 N N
49 CAI H11 C H sing 1.08 N N
50 CAJ H12 C H sing 1.09 N N
51 CAJ H13 C H sing 1.09 N N
52 CAN H14 C H sing 1.1 N N
53 CAN H15 C H sing 1.08 N N
54 CAL H16 C H sing 1.09 N N
55 CAL H17 C H sing 1.09 N N
56 CAA H18 C H sing 1.08 N N
57 CAA H19 C H sing 1.08 N N
58 OAW H20 O H sing 0.97 N N
59 CAP H21 C H sing 1.1 N N
60 CAP H22 C H sing 1.09 N N
61 CAQ H23 C H sing 1.1 N N
62 CAQ H24 C H sing 1.09 N N
63 CAR H25 C H sing 1.12 N N
64 CAT H26 C H sing 1.09 N N
65 CAT H27 C H sing 1.09 N N
66 CAT H28 C H sing 1.09 N N
67 CAU H29 C H sing 1.09 N N
68 CAU H30 C H sing 1.09 N N
69 CAV H31 C H sing 1.1 N N
70 CAV H32 C H sing 1.09 N N
71 CAF H33 C H sing 1.1 N N
72 CAF H34 C H sing 1.09 N N
73 CAG H35 C H sing 1.09 N N
74 CAG H36 C H sing 1.09 N N
75 CAG H37 C H sing 1.09 N N
76 O6 H38 O H sing 0.97 N N
77 O4 H39 O H sing 0.97 N N
78 O2 H40 O H sing 0.97 N N