Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JJ1    

Bonds between two atoms of the molecule

Total Number of Bonds: 88


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O4 C6 O C doub 1.21 N N
2 C6 N1 C N sing 1.35 N N
3 C6 C7 C C sing 1.51 N N
4 N1 C1 N C sing 1.47 N N
5 C1 C2 C C sing 1.53 N N
6 C1 C C C sing 1.51 N N
7 C2 C3 C C sing 1.53 N N
8 C3 C4 C C sing 1.53 N N
9 C4 C5 C C sing 1.53 N N
10 C5 N C N sing 1.47 N N
11 C N3 C N sing 1.35 N N
12 C O C O doub 1.21 N N
13 N3 C19 N C sing 1.46 N N
14 C19 C20 C C sing 1.53 N N
15 C20 C21 C C sing 1.53 N N
16 C21 C26 C C sing 1.53 N N
17 C21 C22 C C sing 1.53 N N
18 C26 C25 C C sing 1.53 N N
19 C25 C24 C C sing 1.53 N N
20 C24 C23 C C sing 1.53 N N
21 C23 C22 C C sing 1.53 N N
22 C7 C8 C C sing 1.53 N N
23 C7 N2 C N sing 1.47 N N
24 C8 O1 C O sing 1.43 N N
25 N2 C9 N C sing 1.35 N N
26 C9 O3 C O doub 1.21 N N
27 C9 C10 C C sing 1.51 N N
28 C10 C11 C C sing 1.53 N N
29 C11 C12 C C sing 1.53 N N
30 C12 C13 C C sing 1.53 N N
31 C13 C14 C C sing 1.53 N N
32 C14 C15 C C sing 1.53 N N
33 C15 C16 C C sing 1.53 N N
34 C16 C17 C C sing 1.53 N N
35 C17 C18 C C sing 1.53 N N
36 C18 O2 C O sing 1.43 N N
37 N1 H1 N H sing 0.97 N N
38 C7 H7 C H sing 1.09 N N
39 C1 HA C H sing 1.09 N N
40 C2 H21C C H sing 1.09 N N
41 C2 H22C C H sing 1.09 N N
42 C3 H31C C H sing 1.09 N N
43 C3 H32C C H sing 1.09 N N
44 C4 H41C C H sing 1.09 N N
45 C4 H42C C H sing 1.09 N N
46 C5 H51C C H sing 1.09 N N
47 C5 H52C C H sing 1.09 N N
48 N HN1 N H sing 1.01 N N
49 N HN2 N H sing 1.01 N N
50 N3 H3 N H sing 0.97 N N
51 C19 H191 C H sing 1.09 N N
52 C19 H192 C H sing 1.09 N N
53 C20 H201 C H sing 1.09 N N
54 C20 H202 C H sing 1.09 N N
55 C21 H21 C H sing 1.09 N N
56 C26 H261 C H sing 1.09 N N
57 C26 H262 C H sing 1.09 N N
58 C22 H221 C H sing 1.09 N N
59 C22 H222 C H sing 1.09 N N
60 C25 H251 C H sing 1.09 N N
61 C25 H252 C H sing 1.09 N N
62 C24 H241 C H sing 1.09 N N
63 C24 H242 C H sing 1.09 N N
64 C23 H231 C H sing 1.09 N N
65 C23 H232 C H sing 1.09 N N
66 C8 H81C C H sing 1.09 N N
67 C8 H82C C H sing 1.09 N N
68 N2 H2 N H sing 0.97 N N
69 O1 HB O H sing 0.97 N N
70 C10 H101 C H sing 1.09 N N
71 C10 H102 C H sing 1.09 N N
72 C11 H111 C H sing 1.09 N N
73 C11 H112 C H sing 1.09 N N
74 C12 H121 C H sing 1.09 N N
75 C12 H122 C H sing 1.09 N N
76 C13 H131 C H sing 1.09 N N
77 C13 H132 C H sing 1.09 N N
78 C14 H141 C H sing 1.09 N N
79 C14 H142 C H sing 1.09 N N
80 C15 H151 C H sing 1.09 N N
81 C15 H152 C H sing 1.09 N N
82 C16 H161 C H sing 1.09 N N
83 C16 H162 C H sing 1.09 N N
84 C17 H171 C H sing 1.09 N N
85 C17 H172 C H sing 1.09 N N
86 C18 H181 C H sing 1.09 N N
87 C18 H182 C H sing 1.09 N N
88 O2 HC O H sing 0.97 N N