Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JMH    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP1 P O P doub 1.48 N N
2 N4 C4 N C doub 1.31 N N
3 P OP2 P O sing 1.61 N N
4 P O5' P O sing 1.61 N N
5 C5 C4 C C sing 1.47 N N
6 C5 C6 C C doub 1.35 N N
7 C4 N3 C N sing 1.39 N N
8 C6 N1 C N sing 1.37 N N
9 O4' C1' O C sing 1.44 N N
10 O4' C4' O C sing 1.44 N N
11 N3 C31 N C sing 1.46 N N
12 N3 C2 N C sing 1.35 N N
13 O5' C5' O C sing 1.43 N N
14 C5' C4' C C sing 1.53 N N
15 N1 C2 N C sing 1.34 N N
16 N1 C1' N C sing 1.47 N N
17 C2 O2 C O doub 1.22 N N
18 C1' C2' C C sing 1.55 N N
19 C4' C3' C C sing 1.54 N N
20 C3' C2' C C sing 1.55 N N
21 C3' O3' C O sing 1.43 N N
22 C2' O2' C O sing 1.43 N N
23 P OP3 P O sing 1.61 N N
24 C5 H1 C H sing 1.08 N N
25 C1' H2 C H sing 1.09 N N
26 C2' H3 C H sing 1.09 N N
27 C3' H4 C H sing 1.09 N N
28 C4' H6 C H sing 1.09 N N
29 C5' H7 C H sing 1.09 N N
30 C5' H8 C H sing 1.09 N N
31 C6 H9 C H sing 1.08 N N
32 C31 H10 C H sing 1.09 N N
33 C31 H11 C H sing 1.09 N N
34 C31 H12 C H sing 1.09 N N
35 N4 H13 N H sing 0.97 N N
36 O2' H16 O H sing 0.97 N N
37 O3' H17 O H sing 0.97 N N
38 OP2 H18 O H sing 0.97 N N
39 OP3 H19 O H sing 0.97 N N