Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JU1    

Bonds between two atoms of the molecule

Total Number of Bonds: 185


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CBT CBS C C sing 1.53 N N
2 CBS CBR C C sing 1.53 N N
3 CBQ CBR C C sing 1.53 N N
4 CBQ CBP C C sing 1.53 N N
5 CBO CBP C C sing 1.53 N N
6 CBO CBN C C sing 1.53 N N
7 CBN CBM C C sing 1.53 N N
8 CBM CBL C C sing 1.53 N N
9 CBL CBK C C sing 1.53 N N
10 CBK CBJ C C sing 1.53 N N
11 CBJ CBI C C sing 1.53 N N
12 OAR CAQ O C sing 1.43 N N
13 CBI CBH C C sing 1.53 N N
14 CBH CBG C C sing 1.53 N N
15 CAQ CBG C C sing 1.53 N N
16 CAQ CAP C C sing 1.53 N N
17 CBD CBA C C sing 1.53 N N
18 CAP OAS C O sing 1.43 N N
19 CAP CAN C C sing 1.53 N N
20 CCA CCB C C sing 1.53 N N
21 CCA CBZ C C sing 1.53 N N
22 CBY CBZ C C sing 1.53 N N
23 CBY CBX C C sing 1.53 N N
24 O5 C6 O C sing 1.43 N N
25 CCB CCC C C sing 1.53 N N
26 O3 C5 O C sing 1.43 N N
27 CBW CBX C C sing 1.53 N N
28 CBW CBV C C sing 1.53 N N
29 NAO CAN N C sing 1.47 N N
30 NAO CBE N C sing 1.35 N N
31 CBA CBC C C sing 1.53 N N
32 CBA CBB C C sing 1.53 N N
33 CBA CAX C C sing 1.51 N N
34 CAN CAM C C sing 1.53 N N
35 C5 C6 C C sing 1.53 N N
36 C5 C4 C C sing 1.53 N N
37 CCS CCR C C sing 1.53 N N
38 C6 C1 C C sing 1.53 N N
39 O1 CAM O C sing 1.43 N N
40 O1 C1 O C sing 1.43 N N
41 CCD CCC C C sing 1.53 N N
42 CCD CCE C C sing 1.53 N N
43 CAY CAX C C doub 1.38 N Y
44 CAY CAZ C C sing 1.38 N Y
45 CAX CAW C C sing 1.38 N Y
46 CBU CBE C C sing 1.51 N N
47 CBU CBV C C sing 1.53 N N
48 CBE OBF C O doub 1.21 N N
49 CCR CCQ C C sing 1.53 N N
50 C1 O2 C O sing 1.43 N N
51 CAZ CAU C C doub 1.38 N Y
52 C4 O4 C O sing 1.43 N N
53 C4 C3 C C sing 1.53 N N
54 CAW CAV C C doub 1.38 N Y
55 CCE CCF C C sing 1.53 N N
56 O4 CAT O C sing 1.43 N N
57 CAU CAV C C sing 1.38 N Y
58 CAU CAT C C sing 1.51 N N
59 C3 O2 C O sing 1.43 N N
60 C3 C2 C C sing 1.53 N N
61 CCQ CCP C C sing 1.53 N N
62 CCF CCG C C sing 1.53 N N
63 CCP CCO C C sing 1.53 N N
64 C2 O6 C O sing 1.43 N N
65 CCG CCH C C sing 1.53 N N
66 CCO CCN C C sing 1.53 N N
67 CCH CCI C C sing 1.53 N N
68 CCN CCM C C sing 1.53 N N
69 CCM CCL C C sing 1.53 N N
70 CCJ CCI C C sing 1.53 N N
71 CCJ CCK C C sing 1.53 N N
72 CCK CCL C C sing 1.53 N N
73 C1 H1 C H sing 1.09 N N
74 C2 H2 C H sing 1.09 N N
75 C2 H3 C H sing 1.09 N N
76 C3 H4 C H sing 1.09 N N
77 C4 H5 C H sing 1.09 N N
78 C5 H6 C H sing 1.09 N N
79 C6 H7 C H sing 1.09 N N
80 CBT H8 C H sing 1.09 N N
81 CBT H9 C H sing 1.09 N N
82 CBT H10 C H sing 1.09 N N
83 CBS H11 C H sing 1.09 N N
84 CBS H12 C H sing 1.09 N N
85 CBR H13 C H sing 1.09 N N
86 CBR H14 C H sing 1.09 N N
87 CBQ H15 C H sing 1.09 N N
88 CBQ H16 C H sing 1.09 N N
89 CBP H17 C H sing 1.09 N N
90 CBP H18 C H sing 1.09 N N
91 CBO H19 C H sing 1.09 N N
92 CBO H20 C H sing 1.09 N N
93 CBN H21 C H sing 1.09 N N
94 CBN H22 C H sing 1.09 N N
95 CBM H23 C H sing 1.09 N N
96 CBM H24 C H sing 1.09 N N
97 CBL H25 C H sing 1.09 N N
98 CBL H26 C H sing 1.09 N N
99 CBK H27 C H sing 1.09 N N
100 CBK H28 C H sing 1.09 N N
101 CBJ H29 C H sing 1.09 N N
102 CBJ H30 C H sing 1.09 N N
103 CBI H31 C H sing 1.09 N N
104 CBI H32 C H sing 1.09 N N
105 CBH H33 C H sing 1.09 N N
106 CBH H34 C H sing 1.09 N N
107 CBG H35 C H sing 1.09 N N
108 CBG H36 C H sing 1.09 N N
109 CAQ H37 C H sing 1.09 N N
110 OAR H38 O H sing 0.97 N N
111 CAP H39 C H sing 1.09 N N
112 OAS H40 O H sing 0.97 N N
113 CAN H41 C H sing 1.09 N N
114 CAM H42 C H sing 1.09 N N
115 CAM H43 C H sing 1.09 N N
116 O5 H44 O H sing 0.97 N N
117 O3 H45 O H sing 0.97 N N
118 O6 H46 O H sing 0.97 N N
119 CAT H47 C H sing 1.09 N N
120 CAT H48 C H sing 1.09 N N
121 CAV H49 C H sing 1.08 N N
122 CAW H50 C H sing 1.08 N N
123 CBD H51 C H sing 1.09 N N
124 CBD H52 C H sing 1.09 N N
125 CBD H53 C H sing 1.09 N N
126 CBB H54 C H sing 1.09 N N
127 CBB H55 C H sing 1.09 N N
128 CBB H56 C H sing 1.09 N N
129 CBC H57 C H sing 1.09 N N
130 CBC H58 C H sing 1.09 N N
131 CBC H59 C H sing 1.09 N N
132 CAY H60 C H sing 1.08 N N
133 CAZ H61 C H sing 1.08 N N
134 NAO H62 N H sing 0.97 N N
135 CBU H63 C H sing 1.09 N N
136 CBU H64 C H sing 1.09 N N
137 CBV H65 C H sing 1.09 N N
138 CBV H66 C H sing 1.09 N N
139 CBW H67 C H sing 1.09 N N
140 CBW H68 C H sing 1.09 N N
141 CBX H69 C H sing 1.09 N N
142 CBX H70 C H sing 1.09 N N
143 CBY H71 C H sing 1.09 N N
144 CBY H72 C H sing 1.09 N N
145 CBZ H73 C H sing 1.09 N N
146 CBZ H74 C H sing 1.09 N N
147 CCA H75 C H sing 1.09 N N
148 CCA H76 C H sing 1.09 N N
149 CCB H77 C H sing 1.09 N N
150 CCB H78 C H sing 1.09 N N
151 CCC H79 C H sing 1.09 N N
152 CCC H80 C H sing 1.09 N N
153 CCD H81 C H sing 1.09 N N
154 CCD H82 C H sing 1.09 N N
155 CCE H83 C H sing 1.09 N N
156 CCE H84 C H sing 1.09 N N
157 CCF H85 C H sing 1.09 N N
158 CCF H86 C H sing 1.09 N N
159 CCG H87 C H sing 1.09 N N
160 CCG H88 C H sing 1.09 N N
161 CCH H89 C H sing 1.09 N N
162 CCH H90 C H sing 1.09 N N
163 CCI H91 C H sing 1.09 N N
164 CCI H92 C H sing 1.09 N N
165 CCJ H93 C H sing 1.09 N N
166 CCJ H94 C H sing 1.09 N N
167 CCK H95 C H sing 1.09 N N
168 CCK H96 C H sing 1.09 N N
169 CCL H97 C H sing 1.09 N N
170 CCL H98 C H sing 1.09 N N
171 CCM H99 C H sing 1.09 N N
172 CCM H100 C H sing 1.09 N N
173 CCN H101 C H sing 1.09 N N
174 CCN H102 C H sing 1.09 N N
175 CCO H103 C H sing 1.09 N N
176 CCO H104 C H sing 1.09 N N
177 CCP H105 C H sing 1.09 N N
178 CCP H106 C H sing 1.09 N N
179 CCQ H107 C H sing 1.09 N N
180 CCQ H108 C H sing 1.09 N N
181 CCR H109 C H sing 1.09 N N
182 CCR H110 C H sing 1.09 N N
183 CCS H111 C H sing 1.09 N N
184 CCS H112 C H sing 1.09 N N
185 CCS H113 C H sing 1.09 N N