Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : KT5    

Bonds between two atoms of the molecule

Total Number of Bonds: 129


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N2A CD1 N C sing 1.39 N N
2 N2A CA2 N C sing 1.44 N N
3 N2A H2 N H sing 1.02 N N
4 CD1 OEB C O doub 1.23 N N
5 CD1 CG1 C C sing 1.52 N N
6 CG1 CB1 C C sing 1.53 N N
7 CG1 HG11 C H sing 1.1 N N
8 CG1 HG21 C H sing 1.1 N N
9 CB1 CA1 C C sing 1.53 N N
10 CB1 HB11 C H sing 1.1 N N
11 CB1 HB21 C H sing 1.1 N N
12 CA1 C1A C C sing 1.52 N N
13 CA1 N1A C N sing 1.44 N N
14 CA1 HA1A C H sing 1.09 N N
15 C1A O11 C O sing 1.36 N N
16 C1A O1A C O doub 1.22 N N
17 O11 HXT1 O H sing 0.98 N N
18 N1A C N C sing 1.39 N N
19 N1A H1 N H sing 1.02 N N
20 C O C O doub 1.23 N N
21 C C14 C C sing 1.48 N N
22 C14 C15 C C doub 1.38 N Y
23 C14 C13 C C sing 1.38 N Y
24 C15 C16 C C sing 1.4 N Y
25 C15 H15 C H sing 1.09 N N
26 C16 C11 C C doub 1.39 N Y
27 C16 H16 C H sing 1.09 N N
28 C13 C12 C C doub 1.39 N Y
29 C13 H13 C H sing 1.09 N N
30 C12 C11 C C sing 1.4 N Y
31 C12 H12 C H sing 1.09 N N
32 C11 C10 C C sing 1.49 N N
33 C10 C5 C C sing 1.57 N N
34 C10 C1 C C sing 1.57 N N
35 C10 H10 C H sing 1.11 N N
36 C5 C6 C C sing 1.53 N N
37 C5 OA2 C O sing 1.43 N N
38 C5 OA1 C O sing 1.43 N N
39 C6 F2 C F sing 1.35 N N
40 C6 F1 C F sing 1.35 N N
41 C6 F3 C F sing 1.35 N N
42 OA2 HA2 O H sing 0.97 N N
43 OA1 HA1 O H sing 0.97 N N
44 C1 C2 C C sing 1.54 N N
45 C1 H11 C H sing 1.1 N N
46 C1 H12A C H sing 1.1 N N
47 C2 C3 C C sing 1.53 N N
48 C2 H21 C H sing 1.1 N N
49 C2 H22 C H sing 1.1 N N
50 C3 C4 C C sing 1.51 N N
51 C3 H31 C H sing 1.1 N N
52 C3 H32 C H sing 1.1 N N
53 C4 C7 C C doub 1.37 N Y
54 C4 C9 C C sing 1.37 N Y
55 C7 N8 C N sing 1.42 N N
56 C7 N1 C N sing 1.35 N Y
57 N8 HN81 N H sing 1.0 N N
58 N8 HN82 N H sing 1.0 N N
59 C9 O1 C O sing 1.37 N N
60 C9 N3 C N doub 1.35 N Y
61 O1 HO1 O H sing 0.97 N N
62 N3 C8 N C sing 1.35 N Y
63 C8 N2 C N sing 1.41 N N
64 C8 N1 C N doub 1.35 N Y
65 N2 HN21 N H sing 1.0 N N
66 N2 HN22 N H sing 1.0 N N
67 OEF CD5 O C doub 1.22 N N
68 OEP CD5 O C sing 1.36 N N
69 OEP HE25 O H sing 0.98 N N
70 CD5 CG5 C C sing 1.51 N N
71 CG5 CB5 C C sing 1.53 N N
72 CG5 HG15 C H sing 1.09 N N
73 CG5 HG25 C H sing 1.1 N N
74 CB5 CA5 C C sing 1.54 N N
75 CB5 HB15 C H sing 1.1 N N
76 CB5 HB25 C H sing 1.1 N N
77 CA5 C5A C C sing 1.52 N N
78 CA5 N5 C N sing 1.44 N N
79 CA5 HA5 C H sing 1.1 N N
80 C5A O5 C O doub 1.22 N N
81 C5A O12 C O sing 1.36 N N
82 O12 HXT5 O H sing 0.98 N N
83 N5 CD4 N C sing 1.39 N N
84 N5 H5 N H sing 1.02 N N
85 OEE CD4 O C doub 1.23 N N
86 CD4 CG4 C C sing 1.52 N N
87 CG4 CB4 C C sing 1.53 N N
88 CG4 HG14 C H sing 1.1 N N
89 CG4 HG24 C H sing 1.1 N N
90 CB4 CA4 C C sing 1.53 N N
91 CB4 HB14 C H sing 1.1 N N
92 CB4 HB24 C H sing 1.1 N N
93 CA4 C4A C C sing 1.52 N N
94 CA4 N4 C N sing 1.44 N N
95 CA4 HA4 C H sing 1.09 N N
96 C4A O4 C O doub 1.22 N N
97 C4A O13 C O sing 1.36 N N
98 O13 HXT4 O H sing 0.98 N N
99 N4 CD3 N C sing 1.39 N N
100 N4 H4 N H sing 1.02 N N
101 OED CD3 O C doub 1.23 N N
102 CD3 CG3 C C sing 1.52 N N
103 CG3 CB3 C C sing 1.53 N N
104 CG3 HG13 C H sing 1.09 N N
105 CG3 HG23 C H sing 1.1 N N
106 CB3 CA3 C C sing 1.53 N N
107 CB3 HB13 C H sing 1.1 N N
108 CB3 HB23 C H sing 1.1 N N
109 CA3 C3A C C sing 1.52 N N
110 CA3 N3A C N sing 1.44 N N
111 CA3 HA3 C H sing 1.09 N N
112 C3A O3 C O doub 1.23 N N
113 C3A O14 C O sing 1.36 N N
114 O14 HXT3 O H sing 0.98 N N
115 N3A CD2 N C sing 1.39 N N
116 N3A H3 N H sing 1.02 N N
117 OEC CD2 O C doub 1.23 N N
118 CD2 CG2 C C sing 1.52 N N
119 CG2 CB2 C C sing 1.53 N N
120 CG2 HG12 C H sing 1.1 N N
121 CG2 HG22 C H sing 1.1 N N
122 CB2 CA2 C C sing 1.53 N N
123 CB2 HB12 C H sing 1.1 N N
124 CB2 HB22 C H sing 1.1 N N
125 CA2 C2A C C sing 1.52 N N
126 CA2 HA2A C H sing 1.09 N N
127 C2A O2 C O doub 1.22 N N
128 C2A O15 C O sing 1.36 N N
129 O15 HXT2 O H sing 0.98 N N