Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : L3U    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CD2 CG C C sing 1.53 N N
2 O3' C3' O C sing 1.43 N N
3 CG CB C C sing 1.53 N N
4 CG CD1 C C sing 1.53 N N
5 C4' C3' C C sing 1.54 N N
6 C4' O4' C O sing 1.44 N N
7 C4' C5' C C sing 1.53 N N
8 C3' C2' C C sing 1.55 N N
9 CB CA C C sing 1.53 N N
10 O2 C2 O C doub 1.22 N N
11 O4' C1' O C sing 1.44 N N
12 C5' O5' C O sing 1.43 N N
13 C1' C2' C C sing 1.55 N N
14 C1' N1 C N sing 1.47 N N
15 O2' C2' O C sing 1.43 N N
16 C2 N1 C N sing 1.35 N N
17 C2 N3 C N sing 1.35 N N
18 N CA N C sing 1.47 N N
19 CA C C C sing 1.51 N N
20 N1 C6 N C sing 1.37 N N
21 O5' S O S sing 1.52 N N
22 C3U N3 C N sing 1.46 N N
23 C N3S C N sing 1.35 N N
24 C O C O doub 1.21 N N
25 N3 C4 N C sing 1.35 N N
26 N3S S N S sing 1.66 N N
27 C6 C5 C C doub 1.35 N N
28 O2S S O S doub 1.42 N N
29 S O1S S O doub 1.42 N N
30 C4 C5 C C sing 1.42 N N
31 C4 O4 C O doub 1.22 N N
32 N H1 N H sing 1.01 N N
33 N H2 N H sing 1.01 N N
34 CA H4 C H sing 1.09 N N
35 CB H5 C H sing 1.09 N N
36 CB H6 C H sing 1.09 N N
37 CG H7 C H sing 1.09 N N
38 CD1 H8 C H sing 1.09 N N
39 CD1 H9 C H sing 1.09 N N
40 CD1 H10 C H sing 1.09 N N
41 CD2 H11 C H sing 1.09 N N
42 CD2 H12 C H sing 1.09 N N
43 CD2 H13 C H sing 1.09 N N
44 C1' H14 C H sing 1.09 N N
45 C2' H15 C H sing 1.09 N N
46 C3' H16 C H sing 1.09 N N
47 C3U H17 C H sing 1.09 N N
48 C3U H18 C H sing 1.09 N N
49 C3U H19 C H sing 1.09 N N
50 C4' H20 C H sing 1.09 N N
51 C5 H21 C H sing 1.08 N N
52 C5' H22 C H sing 1.09 N N
53 C5' H23 C H sing 1.09 N N
54 C6 H24 C H sing 1.08 N N
55 N3S H25 N H sing 0.97 N N
56 O2' H26 O H sing 0.97 N N
57 O3' H27 O H sing 0.97 N N