Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : LCS    

Bonds between two atoms of the molecule

Total Number of Bonds: 37


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C6 N C sing 1.32 N Y
3 C2 C2A C C sing 1.51 N N
4 C2 C3 C C sing 1.39 N Y
5 C3 O3 C O sing 1.36 N N
6 C3 C4 C C doub 1.39 N Y
7 C4 C4A C C sing 1.51 N N
8 C4 C5 C C sing 1.39 N Y
9 C4A N C N sing 1.46 N N
10 C5 C6 C C doub 1.38 N Y
11 C5 C5A C C sing 1.51 N N
12 C5A O4P C O sing 1.43 N N
13 O4P P O P sing 1.61 N N
14 P O1P P O doub 1.48 N N
15 P O2P P O sing 1.61 N N
16 P O3P P O sing 1.61 N N
17 N CA N C doub 1.28 N N
18 CA C C C sing 1.49 N N
19 CA CB C C sing 1.51 N N
20 C O C O doub 1.21 N N
21 C ND C N sing 1.34 N N
22 ND OG N O sing 1.41 N N
23 OG CB O C sing 1.43 N N
24 C2A H2A1 C H sing 1.09 N N
25 C2A H2A2 C H sing 1.09 N N
26 C2A H2A3 C H sing 1.09 N N
27 O3 HO3 O H sing 0.97 N N
28 C4A H4A1 C H sing 1.09 N N
29 C4A H4A2 C H sing 1.09 N N
30 C6 H6 C H sing 1.08 N N
31 C5A H5A1 C H sing 1.09 N N
32 C5A H5A2 C H sing 1.09 N N
33 O2P HOP2 O H sing 0.97 N N
34 O3P HOP3 O H sing 0.97 N N
35 ND HND N H sing 0.97 N N
36 CB HB1 C H sing 1.09 N N
37 CB HB2 C H sing 1.09 N N