Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : M5D    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N24 C23 N C trip 1.14 N N
2 C18 C16 C C sing 1.53 N N
3 C18 C19 C C sing 1.53 N N
4 C21 C19 C C sing 1.53 N N
5 C23 C2 C C sing 1.43 N N
6 C16 C19 C C sing 1.53 N N
7 C16 C14 C C sing 1.51 N N
8 C30 N28 C N sing 1.46 N N
9 N28 N27 N N sing 1.4 N Y
10 N28 C29 N C sing 1.35 N Y
11 C2 N3 C N doub 1.33 N Y
12 C2 C1 C C sing 1.41 N Y
13 N27 C26 N C doub 1.31 N Y
14 C29 C25 C C doub 1.37 N Y
15 C26 C25 C C sing 1.41 N Y
16 C25 C1 C C sing 1.48 N N
17 N3 C4 N C sing 1.32 N Y
18 C1 N6 C N doub 1.33 N Y
19 C14 O15 C O doub 1.21 N N
20 C14 N11 C N sing 1.35 N N
21 C4 C5 C C doub 1.4 N Y
22 N6 C5 N C sing 1.33 N Y
23 C5 N7 C N sing 1.39 N N
24 C9 N11 C N sing 1.47 N N
25 C9 C22 C C sing 1.53 N N
26 C9 C8 C C sing 1.53 N N
27 N11 C12 N C sing 1.47 N N
28 N7 C8 N C sing 1.47 N N
29 N7 C13 N C sing 1.47 N N
30 C13 C12 C C sing 1.53 N N
31 C4 H1 C H sing 1.08 N N
32 C8 H2 C H sing 1.09 N N
33 C8 H3 C H sing 1.09 N N
34 C12 H4 C H sing 1.09 N N
35 C12 H5 C H sing 1.09 N N
36 C16 H6 C H sing 1.09 N N
37 C18 H7 C H sing 1.09 N N
38 C18 H8 C H sing 1.09 N N
39 C19 H9 C H sing 1.09 N N
40 C21 H10 C H sing 1.09 N N
41 C21 H11 C H sing 1.09 N N
42 C21 H12 C H sing 1.09 N N
43 C30 H13 C H sing 1.09 N N
44 C30 H14 C H sing 1.09 N N
45 C30 H15 C H sing 1.09 N N
46 C9 H16 C H sing 1.09 N N
47 C13 H17 C H sing 1.09 N N
48 C13 H18 C H sing 1.09 N N
49 C22 H19 C H sing 1.09 N N
50 C22 H20 C H sing 1.09 N N
51 C22 H21 C H sing 1.09 N N
52 C26 H22 C H sing 1.08 N N
53 C29 H23 C H sing 1.08 N N