Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : M6A    

Bonds between two atoms of the molecule

Total Number of Bonds: 106


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C25 C23 C C sing 1.54 N N
2 C24 C23 C C sing 1.53 N N
3 C23 O8 C O sing 1.42 N N
4 C23 O9 C O sing 1.42 N N
5 O8 C9 O C sing 1.43 N N
6 O7 C6 O C sing 1.42 N N
7 C9 C8 C C sing 1.53 N N
8 C9 C10 C C sing 1.52 N N
9 C30 C6 C C sing 1.54 N N
10 O9 C11 O C sing 1.43 N N
11 C8 C31 C C sing 1.54 N N
12 C8 C7 C C sing 1.53 N N
13 C6 C7 C C sing 1.54 N N
14 C6 C5 C C sing 1.52 N N
15 C32 C10 C C sing 1.52 N N
16 C10 C11 C C sing 1.52 N N
17 C11 C12 C C sing 1.51 N N
18 O1 C1 O C doub 1.21 N N
19 C5 C4 C C sing 1.5 N N
20 C5 O6 C O sing 1.43 N N
21 O10 C12 O C sing 1.43 N N
22 O4 C14 O C doub 1.22 N N
23 C12 C13 C C sing 1.52 N N
24 C12 C33 C C sing 1.56 N N
25 C13 C26 C C sing 1.53 N N
26 C13 O2 C O sing 1.45 N N
27 C1 O2 C O sing 1.34 N N
28 C1 C2 C C sing 1.51 N N
29 C4 C3 C C sing 1.51 N N
30 C4 C29 C C sing 1.52 N N
31 O6 C20 O C sing 1.43 N N
32 C3 C2 C C sing 1.51 N N
33 C3 O3 C O sing 1.46 N N
34 C26 C27 C C sing 1.53 N N
35 C20 C21 C C sing 1.47 N N
36 C14 O3 C O sing 1.35 N N
37 C14 N1 C N sing 1.35 N N
38 C2 C28 C C sing 1.52 N N
39 C21 C22 C C trip 1.17 N N
40 C19 N5 C N sing 1.46 N N
41 O5 C18 O C doub 1.22 N N
42 C15 N1 C N sing 1.46 N N
43 C15 C16 C C sing 1.53 N N
44 N5 C18 N C sing 1.35 N N
45 C18 N4 C N sing 1.35 N N
46 N2 C16 N C sing 1.46 N N
47 N2 C17 N C sing 1.37 N N
48 N4 C17 N C sing 1.38 N N
49 C17 N3 C N doub 1.3 N N
50 C19 H1 C H sing 1.09 N N
51 C19 H2 C H sing 1.09 N N
52 C19 H3 C H sing 1.09 N N
53 N5 H4 N H sing 0.97 N N
54 N4 H5 N H sing 0.97 N N
55 N3 H6 N H sing 0.97 N N
56 N2 H7 N H sing 0.97 N N
57 C16 H8 C H sing 1.09 N N
58 C16 H9 C H sing 1.09 N N
59 C15 H10 C H sing 1.09 N N
60 C15 H11 C H sing 1.09 N N
61 N1 H12 N H sing 0.97 N N
62 C3 H13 C H sing 1.11 N N
63 C4 H14 C H sing 1.14 N N
64 C29 H15 C H sing 1.09 N N
65 C29 H16 C H sing 1.09 N N
66 C29 H17 C H sing 1.09 N N
67 C2 H18 C H sing 1.12 N N
68 C28 H19 C H sing 1.09 N N
69 C28 H20 C H sing 1.09 N N
70 C28 H21 C H sing 1.09 N N
71 C13 H22 C H sing 1.11 N N
72 C26 H23 C H sing 1.09 N N
73 C26 H24 C H sing 1.09 N N
74 C27 H25 C H sing 1.09 N N
75 C27 H26 C H sing 1.09 N N
76 C27 H27 C H sing 1.09 N N
77 O10 H28 O H sing 0.97 N N
78 C33 H29 C H sing 1.09 N N
79 C33 H30 C H sing 1.09 N N
80 C33 H31 C H sing 1.09 N N
81 C11 H32 C H sing 1.12 N N
82 C10 H33 C H sing 1.12 N N
83 C32 H34 C H sing 1.09 N N
84 C32 H35 C H sing 1.09 N N
85 C32 H36 C H sing 1.09 N N
86 C24 H37 C H sing 1.09 N N
87 C24 H38 C H sing 1.09 N N
88 C24 H39 C H sing 1.09 N N
89 C25 H40 C H sing 1.09 N N
90 C25 H41 C H sing 1.09 N N
91 C25 H42 C H sing 1.09 N N
92 C9 H43 C H sing 1.09 N N
93 C8 H44 C H sing 1.08 N N
94 C31 H45 C H sing 1.09 N N
95 C31 H46 C H sing 1.09 N N
96 C31 H47 C H sing 1.09 N N
97 C7 H48 C H sing 1.09 N N
98 C7 H49 C H sing 1.1 N N
99 O7 H50 O H sing 0.97 N N
100 C30 H51 C H sing 1.09 N N
101 C30 H52 C H sing 1.09 N N
102 C30 H53 C H sing 1.09 N N
103 C5 H54 C H sing 1.12 N N
104 C20 H55 C H sing 1.09 N N
105 C20 H56 C H sing 1.09 N N
106 C22 H57 C H sing 1.05 N N