Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
M6O
Bonds between two atoms of the molecule
Total Number of Bonds: 92
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C02
C05
C
C
sing
1.55
N
N
2
C02
O19
C
O
sing
1.46
N
N
3
C03
C05
C
C
sing
1.53
N
N
4
C03
O21
C
O
sing
1.43
N
N
5
C04
C05
C
C
sing
1.53
N
N
6
C04
O23
C
O
sing
1.45
N
N
7
C05
N01
C
N
sing
1.47
N
N
8
C06
C07
C
C
sing
1.55
N
N
9
C06
N01
C
N
sing
1.31
N
N
10
C06
O41
C
O
doub
1.23
N
N
11
C07
C15
C
C
sing
1.51
N
N
12
C08
C09
C
C
sing
1.53
N
N
13
C08
C16
C
C
sing
1.53
N
N
14
C09
C10
C
C
sing
1.57
N
N
15
C10
C11
C
C
sing
1.46
N
N
16
C11
C12
C
C
sing
1.51
N
N
17
C12
C13
C
C
sing
1.41
N
N
18
C13
C14
C
C
sing
1.51
N
N
19
C15
C17
C
C
sing
1.52
N
N
20
C16
C17
C
C
sing
1.49
N
N
21
O18
AL43
O
AL
sing
1.86
N
N
22
O18
MO44
O
MO
sing
2.31
N
N
23
O18
MO45
O
MO
sing
2.3
N
N
24
O19
AL43
O
AL
sing
1.93
N
N
25
O19
MO45
O
MO
sing
2.34
N
N
26
O19
MO46
O
MO
sing
2.33
N
N
27
O20
AL43
O
AL
sing
1.88
N
N
28
O20
MO46
O
MO
sing
2.3
N
N
29
O20
MO47
O
MO
sing
2.31
N
N
30
O21
AL43
O
AL
sing
1.9
N
N
31
O21
MO47
O
MO
sing
2.33
N
N
32
O21
MO48
O
MO
sing
2.34
N
N
33
O22
AL43
O
AL
sing
1.89
N
N
34
O22
MO48
O
MO
sing
2.29
N
N
35
O22
MO49
O
MO
sing
2.34
N
N
36
O23
AL43
O
AL
sing
1.91
N
N
37
O23
MO44
O
MO
sing
2.37
N
N
38
O23
MO49
O
MO
sing
2.31
N
N
39
O24
MO44
O
MO
sing
1.92
N
N
40
O24
MO45
O
MO
sing
1.92
N
N
41
O25
MO45
O
MO
sing
1.95
N
N
42
O25
MO46
O
MO
sing
1.92
N
N
43
O26
MO46
O
MO
sing
1.92
N
N
44
O26
MO47
O
MO
sing
1.93
N
N
45
O27
MO47
O
MO
sing
1.93
N
N
46
O27
MO48
O
MO
sing
1.93
N
N
47
O28
MO48
O
MO
sing
1.93
N
N
48
O28
MO49
O
MO
sing
1.92
N
N
49
O29
MO44
O
MO
sing
1.94
N
N
50
O29
MO49
O
MO
sing
1.94
N
N
51
O30
MO44
O
MO
sing
1.72
N
N
52
O31
MO44
O
MO
sing
1.71
N
N
53
O32
MO45
O
MO
sing
1.71
N
N
54
O33
MO45
O
MO
sing
1.71
N
N
55
O34
MO46
O
MO
sing
1.69
N
N
56
O35
MO47
O
MO
sing
1.72
N
N
57
O36
MO47
O
MO
sing
1.7
N
N
58
O37
MO48
O
MO
sing
1.69
N
N
59
O38
MO48
O
MO
sing
1.69
N
N
60
O39
MO49
O
MO
sing
1.71
N
N
61
O40
MO49
O
MO
sing
1.69
N
N
62
O42
MO46
O
MO
sing
1.72
N
N
63
C02
H1
C
H
sing
1.1
N
N
64
C02
H2
C
H
sing
1.1
N
N
65
C03
H3
C
H
sing
1.1
N
N
66
C03
H4
C
H
sing
1.1
N
N
67
C04
H5
C
H
sing
1.1
N
N
68
C04
H6
C
H
sing
1.1
N
N
69
C07
H7
C
H
sing
1.1
N
N
70
C07
H8
C
H
sing
1.1
N
N
71
C08
H9
C
H
sing
1.1
N
N
72
C08
H10
C
H
sing
1.1
N
N
73
C09
H11
C
H
sing
1.1
N
N
74
C09
H12
C
H
sing
1.1
N
N
75
C10
H13
C
H
sing
1.1
N
N
76
C10
H14
C
H
sing
1.1
N
N
77
C11
H15
C
H
sing
1.1
N
N
78
C12
H16
C
H
sing
1.1
N
N
79
C13
H17
C
H
sing
1.1
N
N
80
C13
H18
C
H
sing
1.1
N
N
81
C14
H19
C
H
sing
1.1
N
N
82
C14
H20
C
H
sing
1.1
N
N
83
C14
H21
C
H
sing
1.1
N
N
84
C15
H22
C
H
sing
1.1
N
N
85
C15
H23
C
H
sing
1.1
N
N
86
C16
H24
C
H
sing
1.1
N
N
87
C16
H25
C
H
sing
1.1
N
N
88
C17
H26
C
H
sing
1.1
N
N
89
C17
H27
C
H
sing
1.1
N
N
90
N01
H28
N
H
sing
1.0
N
N
91
C11
H41
C
H
sing
1.1
N
N
92
C12
H42
C
H
sing
1.1
N
N