Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : M7T    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C8 C9 C C sing 1.55 N N
2 C8 C7 C C sing 1.55 N N
3 C9 C10 C C sing 1.54 N N
4 C7 N1 C N sing 1.49 N N
5 C10 N1 C N sing 1.48 N N
6 N1 C6 N C sing 1.47 N N
7 C6 C5 C C sing 1.51 N N
8 C11 C5 C C doub 1.38 N Y
9 C11 C12 C C sing 1.38 N Y
10 C5 C4 C C sing 1.38 N Y
11 C12 C2 C C doub 1.38 N Y
12 C4 C3 C C doub 1.38 N Y
13 C2 C1 C C sing 1.51 N N
14 C2 C3 C C sing 1.38 N Y
15 C1 N C N sing 1.47 N N
16 O C O C doub 1.22 N N
17 N C N C sing 1.35 N N
18 C N2 C N sing 1.35 N N
19 N2 C13 N C sing 1.47 N N
20 N2 C20 N C sing 1.47 N N
21 C13 C14 C C sing 1.53 N N
22 C20 C21 C C sing 1.53 N N
23 C14 N3 C N sing 1.47 N N
24 C21 N3 C N sing 1.47 N N
25 N3 C15 N C sing 1.35 N N
26 C15 C16 C C sing 1.47 N N
27 C15 O1 C O doub 1.22 N N
28 C17 C16 C C doub 1.37 N Y
29 C17 C18 C C sing 1.37 N Y
30 C16 S C S sing 1.76 N Y
31 C18 C19 C C doub 1.34 N Y
32 C19 S C S sing 1.71 N Y
33 C19 H1 C H sing 1.08 N N
34 C18 H2 C H sing 1.08 N N
35 C17 H3 C H sing 1.08 N N
36 C14 H4 C H sing 1.09 N N
37 C14 H5 C H sing 1.09 N N
38 C13 H6 C H sing 1.09 N N
39 C13 H7 C H sing 1.09 N N
40 C21 H8 C H sing 1.09 N N
41 C21 H9 C H sing 1.09 N N
42 C20 H10 C H sing 1.09 N N
43 C20 H11 C H sing 1.09 N N
44 N H12 N H sing 0.97 N N
45 C1 H13 C H sing 1.09 N N
46 C1 H14 C H sing 1.09 N N
47 C12 H15 C H sing 1.08 N N
48 C11 H16 C H sing 1.08 N N
49 C4 H17 C H sing 1.08 N N
50 C3 H18 C H sing 1.08 N N
51 C6 H19 C H sing 1.09 N N
52 C6 H20 C H sing 1.09 N N
53 C10 H22 C H sing 1.09 N N
54 C10 H23 C H sing 1.09 N N
55 C9 H24 C H sing 1.09 N N
56 C9 H25 C H sing 1.09 N N
57 C8 H26 C H sing 1.09 N N
58 C8 H27 C H sing 1.09 N N
59 C7 H28 C H sing 1.09 N N
60 C7 H29 C H sing 1.09 N N