Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : M8E    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 O1 N O sing 1.46 N N
2 O1 C4 O C sing 1.43 N N
3 C6 C7 C C sing 1.53 N N
4 C6 C5 C C sing 1.53 N N
5 C7 N2 C N sing 1.47 N N
6 N2 C8 N C sing 1.47 N N
7 N2 C5' N C sing 1.47 N N
8 C5' C4' C C sing 1.53 N N
9 C4' O4' C O sing 1.44 N N
10 C4' C3' C C sing 1.54 N N
11 O4' C1' O C sing 1.44 N N
12 C1' N6 C N sing 1.47 N N
13 C1' C2' C C sing 1.55 N N
14 N6 C13 N C sing 1.37 N Y
15 N6 C12 N C sing 1.37 N Y
16 C13 N3 C N doub 1.33 N Y
17 C13 C11 C C sing 1.41 N Y
18 N3 C9 N C sing 1.32 N Y
19 C9 N4 C N doub 1.32 N Y
20 N4 C10 N C sing 1.33 N Y
21 C10 N7 C N sing 1.38 N N
22 C10 C11 C C doub 1.41 N Y
23 C11 N5 C N sing 1.35 N Y
24 N5 C12 N C doub 1.31 N Y
25 C12 C14 C C sing 1.47 N N
26 C2' O2' C O sing 1.43 N N
27 C2' C3' C C sing 1.55 N N
28 C3' O3' C O sing 1.43 N N
29 C5 C4 C C sing 1.53 N N
30 C15 C14 C C doub 1.33 N N
31 N1 HN1 N H sing 1.01 N N
32 N1 HN1A N H sing 1.01 N N
33 C6 H6 C H sing 1.09 N N
34 C6 H6A C H sing 1.09 N N
35 C7 H7 C H sing 1.09 N N
36 C7 H7A C H sing 1.09 N N
37 C8 H8 C H sing 1.09 N N
38 C8 H8A C H sing 1.09 N N
39 C8 H8B C H sing 1.09 N N
40 C5' H5' C H sing 1.09 N N
41 C5' H5'A C H sing 1.09 N N
42 C4' H4' C H sing 1.09 N N
43 C1' H1' C H sing 1.09 N N
44 C9 H9 C H sing 1.08 N N
45 N7 HN7 N H sing 0.97 N N
46 N7 HN7A N H sing 0.97 N N
47 C2' H2' C H sing 1.09 N N
48 O2' HO2' O H sing 0.97 N N
49 C3' H3' C H sing 1.09 N N
50 O3' HO3' O H sing 0.97 N N
51 C5 H5 C H sing 1.09 N N
52 C5 H5A C H sing 1.09 N N
53 C4 H4 C H sing 1.09 N N
54 C4 H4A C H sing 1.09 N N
55 C15 H15 C H sing 1.08 N N
56 C15 H15A C H sing 1.08 N N
57 C14 H14 C H sing 1.08 N N