Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : M8M    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 O2 N O sing 1.46 N N
2 O2 C4 O C sing 1.43 N N
3 C4 C5 C C sing 1.53 N N
4 C5 N2 C N sing 1.47 N N
5 N2 C6 N C sing 1.47 N N
6 N2 C5' N C sing 1.47 N N
7 C5' C4' C C sing 1.53 N N
8 C4' O4' C O sing 1.44 N N
9 C4' C3' C C sing 1.54 N N
10 O4' C1' O C sing 1.44 N N
11 C1' N5 C N sing 1.47 N N
12 C1' C2' C C sing 1.55 N N
13 N5 C11 N C sing 1.37 N Y
14 N5 C7 N C sing 1.36 N Y
15 C11 N4 C N doub 1.33 N Y
16 C11 C12 C C sing 1.4 N Y
17 N4 C10 N C sing 1.32 N Y
18 C10 N3 C N doub 1.32 N Y
19 N3 C9 N C sing 1.33 N Y
20 C9 N7 C N sing 1.38 N N
21 C9 C12 C C doub 1.41 N Y
22 C12 N6 C N sing 1.35 N Y
23 N6 C7 N C doub 1.3 N Y
24 C7 C8 C C sing 1.51 N N
25 C2' O2' C O sing 1.43 N N
26 C2' C3' C C sing 1.55 N N
27 C3' O3' C O sing 1.43 N N
28 N1 HN1 N H sing 1.01 N N
29 N1 HN1A N H sing 1.01 N N
30 C4 H4 C H sing 1.09 N N
31 C4 H4A C H sing 1.09 N N
32 C5 H5 C H sing 1.09 N N
33 C5 H5A C H sing 1.09 N N
34 C6 H6 C H sing 1.09 N N
35 C6 H6A C H sing 1.09 N N
36 C6 H6B C H sing 1.09 N N
37 C5' H5' C H sing 1.09 N N
38 C5' H5'A C H sing 1.09 N N
39 C4' H4' C H sing 1.09 N N
40 C1' H1' C H sing 1.09 N N
41 C10 H10 C H sing 1.08 N N
42 N7 HN7 N H sing 0.97 N N
43 N7 HN7A N H sing 0.97 N N
44 C2' H2' C H sing 1.09 N N
45 O2' HO2' O H sing 0.97 N N
46 C3' H3' C H sing 1.09 N N
47 O3' HO3' O H sing 0.97 N N
48 C8 H8 C H sing 1.09 N N
49 C8 H8A C H sing 1.09 N N
50 C8 H8B C H sing 1.09 N N