Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MA6    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N3 C N doub 1.32 N Y
2 C2 N1 C N sing 1.32 N Y
3 C2 H2 C H sing 1.08 N N
4 C4 C5 C C doub 1.4 N Y
5 C4 N9 C N sing 1.37 N Y
6 C4 N3 C N sing 1.33 N Y
7 C5 C6 C C sing 1.41 N Y
8 C5 N7 C N sing 1.35 N Y
9 P OP1 P O doub 1.48 N N
10 P OP2 P O sing 1.61 N N
11 P OP3 P O sing 1.61 N N
12 P O5' P O sing 1.61 N N
13 OP2 HOP2 O H sing 0.97 N N
14 O5' C5' O C sing 1.43 N N
15 C5' C4' C C sing 1.53 N N
16 C5' H5' C H sing 1.09 N N
17 C5' H5'' C H sing 1.09 N N
18 C4' O4' C O sing 1.44 N N
19 C4' C3' C C sing 1.54 N N
20 C4' H4' C H sing 1.09 N N
21 O4' C1' O C sing 1.44 N N
22 C1' N9 C N sing 1.46 N N
23 C1' C2' C C sing 1.55 N N
24 C1' H1' C H sing 1.09 N N
25 N9 C8 N C sing 1.36 N Y
26 N1 C6 N C doub 1.33 N Y
27 C6 N6 C N sing 1.38 N N
28 N6 C9 N C sing 1.47 N N
29 N6 C10 N C sing 1.47 N N
30 C9 H91 C H sing 1.09 N N
31 C9 H92 C H sing 1.09 N N
32 C9 H93 C H sing 1.09 N N
33 C10 H101 C H sing 1.09 N N
34 C10 H102 C H sing 1.09 N N
35 C10 H103 C H sing 1.09 N N
36 N7 C8 N C doub 1.3 N Y
37 C8 H8 C H sing 1.08 N N
38 C2' O2' C O sing 1.43 N N
39 C2' C3' C C sing 1.55 N N
40 C2' H2' C H sing 1.09 N N
41 O2' HO2' O H sing 0.97 N N
42 C3' O3' C O sing 1.43 N N
43 C3' H3' C H sing 1.09 N N
44 O3' HO3' O H sing 0.97 N N
45 OP3 HOP3 O H sing 0.97 N N