Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MTR    

Bonds between two atoms of the molecule

Total Number of Bonds: 37


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P OP1 P O doub 1.5 N N
2 P OP2 P O sing 1.62 N N
3 P O5' P O sing 1.62 N N
4 P OP3 P O sing 1.62 N N
5 OP2 HOP2 O H sing 0.98 N N
6 O5' C5' O C sing 1.42 N N
7 C1 C6 C C sing 1.45 N N
8 C1 C2 C C doub 1.34 N N
9 C1 C1' C C sing 1.49 N N
10 C6 C5 C C doub 1.34 N N
11 C6 H6 C H sing 1.09 N N
12 C2 N3 C N sing 1.37 N N
13 C2 H2 C H sing 1.08 N N
14 N3 C4 N C sing 1.39 N N
15 N3 H3 N H sing 1.02 N N
16 C4 O4 C O doub 1.23 N N
17 C4 C5 C C sing 1.5 N N
18 C5 C5M C C sing 1.49 N N
19 C5M H71 C H sing 1.09 N N
20 C5M H72 C H sing 1.09 N N
21 C5M H73 C H sing 1.09 N N
22 C2' C1' C C sing 1.52 N N
23 C2' C3' C C sing 1.51 N N
24 C2' H2' C H sing 1.09 N N
25 C2' H2'' C H sing 1.1 N N
26 C5' C4' C C sing 1.52 N N
27 C5' H5' C H sing 1.09 N N
28 C5' H5'' C H sing 1.09 N N
29 C4' O4' C O sing 1.44 N N
30 C4' C3' C C sing 1.52 N N
31 C4' H4' C H sing 1.09 N N
32 O4' C1' O C sing 1.44 N N
33 C1' H1' C H sing 1.1 N N
34 C3' O3' C O sing 1.43 N N
35 C3' H3' C H sing 1.09 N N
36 O3' HO3' O H sing 0.97 N N
37 OP3 HOP3 O H sing 0.98 N N