Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MYD    

Bonds between two atoms of the molecule

Total Number of Bonds: 76


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C53 O51 C O sing 1.43 N N
2 C53 H531 C H sing 1.09 N N
3 C53 H532 C H sing 1.09 N N
4 C53 H533 C H sing 1.09 N N
5 O51 C46 O C sing 1.36 N N
6 C46 C47 C C doub 1.39 N Y
7 C46 C39 C C sing 1.39 N Y
8 C47 C52 C C sing 1.51 N N
9 C47 C48 C C sing 1.36 N Y
10 C52 H521 C H sing 1.09 N N
11 C52 H522 C H sing 1.09 N N
12 C52 H523 C H sing 1.09 N N
13 C48 C49 C C sing 1.51 N N
14 C48 C41 C C doub 1.4 N Y
15 C49 O50 C O sing 1.45 N N
16 C49 H491 C H sing 1.09 N N
17 C49 H492 C H sing 1.09 N N
18 O50 C42 O C sing 1.34 N N
19 C42 O43 C O doub 1.22 N N
20 C42 C41 C C sing 1.47 N N
21 C41 C40 C C sing 1.4 N Y
22 C40 O31 C O sing 1.36 N N
23 C40 C39 C C doub 1.39 N Y
24 O31 H31 O H sing 0.97 N N
25 C39 C38 C C sing 1.51 N N
26 C38 C37 C C sing 1.53 N N
27 C38 H381 C H sing 1.09 N N
28 C38 H382 C H sing 1.09 N N
29 C37 O36 C O sing 1.43 N N
30 C37 H371 C H sing 1.09 N N
31 C37 H372 C H sing 1.09 N N
32 O36 P35 O P sing 1.61 N N
33 P35 O45 P O sing 1.61 N N
34 P35 O30 P O doub 1.48 N N
35 P35 C34 P C sing 1.82 N N
36 O45 H45 O H sing 0.97 N N
37 C34 P33 C P sing 1.82 N N
38 C34 H341 C H sing 1.09 N N
39 C34 H342 C H sing 1.09 N N
40 P33 O44 P O sing 1.61 N N
41 P33 O29 P O doub 1.48 N N
42 P33 O32 P O sing 1.61 N N
43 O44 H44 O H sing 0.97 N N
44 O32 C28 O C sing 1.43 N N
45 C28 C27 C C sing 1.53 N N
46 C28 H281 C H sing 1.09 N N
47 C28 H282 C H sing 1.09 N N
48 C27 O24 C O sing 1.44 N N
49 C27 C26 C C sing 1.54 N N
50 C27 H27 C H sing 1.09 N N
51 O24 C23 O C sing 1.44 N N
52 C26 O25 C O sing 1.43 N N
53 C26 C22 C C sing 1.55 N N
54 C26 H26 C H sing 1.09 N N
55 O25 H25 O H sing 0.97 N N
56 C22 O21 C O sing 1.43 N N
57 C22 C23 C C sing 1.55 N N
58 C22 H22 C H sing 1.09 N N
59 O21 H21 O H sing 0.97 N N
60 C23 N20 C N sing 1.46 N N
61 C23 H23 C H sing 1.09 N N
62 N20 C16 N C sing 1.36 N Y
63 N20 C19 N C sing 1.37 N Y
64 C16 N15 C N doub 1.3 N Y
65 C16 H16 C H sing 1.08 N N
66 N15 C14 N C sing 1.35 N Y
67 C14 C19 C C doub 1.4 N Y
68 C14 C13 C C sing 1.41 N Y
69 C19 N18 C N sing 1.33 N Y
70 N18 C17 N C doub 1.32 N Y
71 C17 N12 C N sing 1.32 N Y
72 C17 H17 C H sing 1.08 N N
73 N12 C13 N C doub 1.33 N Y
74 C13 N11 C N sing 1.38 N N
75 N11 H111 N H sing 0.97 N N
76 N11 H112 N H sing 0.97 N N