Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
MYD
Bonds between two atoms of the molecule
Total Number of Bonds: 76
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C53
O51
C
O
sing
1.43
N
N
2
C53
H531
C
H
sing
1.09
N
N
3
C53
H532
C
H
sing
1.09
N
N
4
C53
H533
C
H
sing
1.09
N
N
5
O51
C46
O
C
sing
1.36
N
N
6
C46
C47
C
C
doub
1.39
N
Y
7
C46
C39
C
C
sing
1.39
N
Y
8
C47
C52
C
C
sing
1.51
N
N
9
C47
C48
C
C
sing
1.36
N
Y
10
C52
H521
C
H
sing
1.09
N
N
11
C52
H522
C
H
sing
1.09
N
N
12
C52
H523
C
H
sing
1.09
N
N
13
C48
C49
C
C
sing
1.51
N
N
14
C48
C41
C
C
doub
1.4
N
Y
15
C49
O50
C
O
sing
1.45
N
N
16
C49
H491
C
H
sing
1.09
N
N
17
C49
H492
C
H
sing
1.09
N
N
18
O50
C42
O
C
sing
1.34
N
N
19
C42
O43
C
O
doub
1.22
N
N
20
C42
C41
C
C
sing
1.47
N
N
21
C41
C40
C
C
sing
1.4
N
Y
22
C40
O31
C
O
sing
1.36
N
N
23
C40
C39
C
C
doub
1.39
N
Y
24
O31
H31
O
H
sing
0.97
N
N
25
C39
C38
C
C
sing
1.51
N
N
26
C38
C37
C
C
sing
1.53
N
N
27
C38
H381
C
H
sing
1.09
N
N
28
C38
H382
C
H
sing
1.09
N
N
29
C37
O36
C
O
sing
1.43
N
N
30
C37
H371
C
H
sing
1.09
N
N
31
C37
H372
C
H
sing
1.09
N
N
32
O36
P35
O
P
sing
1.61
N
N
33
P35
O45
P
O
sing
1.61
N
N
34
P35
O30
P
O
doub
1.48
N
N
35
P35
C34
P
C
sing
1.82
N
N
36
O45
H45
O
H
sing
0.97
N
N
37
C34
P33
C
P
sing
1.82
N
N
38
C34
H341
C
H
sing
1.09
N
N
39
C34
H342
C
H
sing
1.09
N
N
40
P33
O44
P
O
sing
1.61
N
N
41
P33
O29
P
O
doub
1.48
N
N
42
P33
O32
P
O
sing
1.61
N
N
43
O44
H44
O
H
sing
0.97
N
N
44
O32
C28
O
C
sing
1.43
N
N
45
C28
C27
C
C
sing
1.53
N
N
46
C28
H281
C
H
sing
1.09
N
N
47
C28
H282
C
H
sing
1.09
N
N
48
C27
O24
C
O
sing
1.44
N
N
49
C27
C26
C
C
sing
1.54
N
N
50
C27
H27
C
H
sing
1.09
N
N
51
O24
C23
O
C
sing
1.44
N
N
52
C26
O25
C
O
sing
1.43
N
N
53
C26
C22
C
C
sing
1.55
N
N
54
C26
H26
C
H
sing
1.09
N
N
55
O25
H25
O
H
sing
0.97
N
N
56
C22
O21
C
O
sing
1.43
N
N
57
C22
C23
C
C
sing
1.55
N
N
58
C22
H22
C
H
sing
1.09
N
N
59
O21
H21
O
H
sing
0.97
N
N
60
C23
N20
C
N
sing
1.46
N
N
61
C23
H23
C
H
sing
1.09
N
N
62
N20
C16
N
C
sing
1.36
N
Y
63
N20
C19
N
C
sing
1.37
N
Y
64
C16
N15
C
N
doub
1.3
N
Y
65
C16
H16
C
H
sing
1.08
N
N
66
N15
C14
N
C
sing
1.35
N
Y
67
C14
C19
C
C
doub
1.4
N
Y
68
C14
C13
C
C
sing
1.41
N
Y
69
C19
N18
C
N
sing
1.33
N
Y
70
N18
C17
N
C
doub
1.32
N
Y
71
C17
N12
C
N
sing
1.32
N
Y
72
C17
H17
C
H
sing
1.08
N
N
73
N12
C13
N
C
doub
1.33
N
Y
74
C13
N11
C
N
sing
1.38
N
N
75
N11
H111
N
H
sing
0.97
N
N
76
N11
H112
N
H
sing
0.97
N
N