Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : N01    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 PA O P sing 1.61 N N
2 O3 PN O P sing 1.61 N N
3 PA O1A P O sing 1.55 N N
4 PA O2A P O doub 1.55 N N
5 PA O5B P O sing 1.61 N N
6 PN O1N P O sing 1.55 N N
7 PN O2N P O doub 1.54 N N
8 PN O5D P O sing 1.61 N N
9 N1A C2A N C doub 1.32 N Y
10 N1A C6A N C sing 1.33 N Y
11 C1B C2B C C sing 1.55 N N
12 C1B O4B C O sing 1.44 N N
13 C1B N9A C N sing 1.46 N N
14 C1D N1N C N sing 1.46 N N
15 C1D C2D C C sing 1.55 N N
16 C1D O4D C O sing 1.44 N N
17 N1N C2N N C doub 1.32 N Y
18 N1N C6N N C sing 1.32 N Y
19 O1X P2B O P sing 1.57 N N
20 C2A N3A C N sing 1.32 N Y
21 C2B O2B C O sing 1.43 N N
22 C2B C3B C C sing 1.55 N N
23 O2B P2B O P sing 1.61 N N
24 P2B O2X P O sing 1.57 N N
25 P2B O3X P O doub 1.57 N N
26 C2D O2D C O sing 1.43 N N
27 C2D C3D C C sing 1.55 N N
28 C2N C3N C C sing 1.4 N Y
29 N3A C4A N C doub 1.33 N Y
30 C3B O3B C O sing 1.43 N N
31 C3B C4B C C sing 1.54 N N
32 C3D O3D C O sing 1.43 N N
33 C3D C4D C C sing 1.54 N N
34 C3N C4N C C doub 1.4 N Y
35 C3N C7N C C sing 1.47 N N
36 C4A C5A C C sing 1.41 N Y
37 C4A N9A C N sing 1.37 N Y
38 C4B O4B C O sing 1.44 N N
39 C4B C5B C C sing 1.53 N N
40 C4D O4D C O sing 1.44 N N
41 C4D C5D C C sing 1.53 N N
42 C4N C5N C C sing 1.38 N Y
43 C5A C6A C C doub 1.4 N Y
44 C5A N7A C N sing 1.35 N Y
45 C5B O5B C O sing 1.43 N N
46 C5D O5D C O sing 1.43 N N
47 C5N C6N C C doub 1.38 N Y
48 C6A N6A C N sing 1.38 N N
49 N7A C8A N C doub 1.3 N Y
50 C7N O7N C O doub 1.21 N N
51 C7N CAA C C sing 1.51 N N
52 C8A N9A C N sing 1.36 N Y
53 C1B H1B C H sing 1.09 N N
54 C1D H1D C H sing 1.09 N N
55 C2A H2A C H sing 1.08 N N
56 C2B H2B C H sing 1.09 N N
57 C2D H2D C H sing 1.09 N N
58 O2D HO2D O H sing 0.97 N N
59 C2N H2N C H sing 1.08 N N
60 C3B H3B C H sing 1.09 N N
61 O3B HO3B O H sing 0.97 N N
62 C3D H3D C H sing 1.09 N N
63 O3D HO3D O H sing 0.97 N N
64 C4B H4B C H sing 1.09 N N
65 C4D H4D C H sing 1.09 N N
66 C4N H4N C H sing 1.08 N N
67 C5B H5B C H sing 1.09 N N
68 C5B H5BA C H sing 1.09 N N
69 C5D H5D C H sing 1.09 N N
70 C5D H5DA C H sing 1.09 N N
71 C5N H5N C H sing 1.08 N N
72 N6A HN6A N H sing 0.97 N N
73 N6A HN6B N H sing 0.97 N N
74 C6N H6N C H sing 1.08 N N
75 C8A H8A C H sing 1.08 N N
76 CAA HAA C H sing 1.09 N N
77 CAA HAAA C H sing 1.09 N N
78 CAA HAAB C H sing 1.09 N N