Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : NPJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1A C2A C C sing 1.53 N N
2 C1A O1A C O sing 1.43 N N
3 C1A O5A C O sing 1.43 N N
4 C1A H1A C H sing 1.09 N N
5 C2A C3A C C sing 1.53 N N
6 C2A O2A C O sing 1.43 N N
7 C2A H2A C H sing 1.09 N N
8 C3A C4A C C sing 1.53 N N
9 C3A O3A C O sing 1.43 N N
10 C3A H3A C H sing 1.09 N N
11 C4A C5A C C sing 1.53 N N
12 C4A O4A C O sing 1.43 N N
13 C4A H4A C H sing 1.09 N N
14 C5A C6A C C sing 1.53 N N
15 C5A O5A C O sing 1.43 N N
16 C5A H5A C H sing 1.09 N N
17 C6A O6A C O sing 1.43 N N
18 C6A H6A1 C H sing 1.09 N N
19 C6A H6A2 C H sing 1.09 N N
20 O1A C4B O C sing 1.43 N N
21 O2A HO2A O H sing 0.97 N N
22 O3A HO3A O H sing 0.97 N N
23 O4A HO4A O H sing 0.97 N N
24 O6A HO6A O H sing 0.97 N N
25 C1B C2B C C sing 1.53 N N
26 C1B O1B C O sing 1.43 N N
27 C1B O5B C O sing 1.43 N N
28 C1B H1B C H sing 1.09 N N
29 C2B C3B C C sing 1.53 N N
30 C2B O2B C O sing 1.43 N N
31 C2B H2B C H sing 1.09 N N
32 C3B C4B C C sing 1.53 N N
33 C3B O3B C O sing 1.43 N N
34 C3B H3B C H sing 1.09 N N
35 C4B C5B C C sing 1.53 N N
36 C4B H4B C H sing 1.09 N N
37 C5B C6B C C sing 1.53 N N
38 C5B O5B C O sing 1.43 N N
39 C5B H5B C H sing 1.09 N N
40 C6B O6B C O sing 1.43 N N
41 C6B H6B1 C H sing 1.09 N N
42 C6B H6B2 C H sing 1.09 N N
43 O1B C4C O C sing 1.36 N N
44 O2B HO2B O H sing 0.97 N N
45 O3B HO3B O H sing 0.97 N N
46 O6B HO6B O H sing 0.97 N N
47 C1C C2C C C doub 1.38 N Y
48 C1C C6C C C sing 1.38 N Y
49 C1C N1C C N sing 1.48 N N
50 C2C C3C C C sing 1.38 N Y
51 C2C H2C C H sing 1.08 N N
52 C3C C4C C C doub 1.39 N Y
53 C3C H3C C H sing 1.08 N N
54 C4C C5C C C sing 1.39 N Y
55 C5C C6C C C doub 1.38 N Y
56 C5C H5C C H sing 1.08 N N
57 C6C H6C C H sing 1.08 N N
58 N1C O2C N O sing 1.22 N N
59 N1C O3C N O doub 1.22 N N