Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : O39    

Bonds between two atoms of the molecule

Total Number of Bonds: 110


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C45 C44 C C sing N Y
2 C45 C46 C C doub N Y
3 C44 C43 C C doub N Y
4 C05 C02 C C doub N Y
5 C05 C04 C C sing N Y
6 C02 C06 C C sing N Y
7 C46 C22 C C sing N Y
8 C11 C12 C C doub N Y
9 C11 C08 C C sing N Y
10 C43 C26 C C sing N Y
11 C12 C09 C C sing N Y
12 C04 C01 C C doub N Y
13 C06 C08 C C sing N N
14 C06 C03 C C doub N Y
15 C22 C26 C C doub N Y
16 C22 C25 C C sing N Y
17 C08 N10 C N doub N Y
18 C26 N23 C N sing N Y
19 C09 C42 C C sing N Y
20 C09 C13 C C doub N Y
21 C42 C41 C C doub N Y
22 C03 C01 C C sing N Y
23 C03 IR07 C IR sing N N
24 C59 C58 C C doub N Y
25 C59 C55 C C sing N Y
26 C38 N47 C N sing N N
27 C38 C33 C C sing N N
28 C25 C24 C C doub N Y
29 C58 N57 C N sing N Y
30 N10 C13 N C sing N Y
31 N10 IR07 N IR sing N N
32 C13 C39 C C sing N Y
33 N23 C21 N C doub N Y
34 N23 IR07 N IR sing N N
35 N47 C48 N C sing N N
36 C37 C33 C C doub N Y
37 C37 N34 C N sing N Y
38 C33 C36 C C sing N Y
39 C41 C40 C C sing N Y
40 C55 C54 C C doub N Y
41 N57 C56 N C doub N Y
42 C24 C21 C C sing N Y
43 N34 IR07 N IR sing N N
44 N34 C32 N C doub N Y
45 C21 C18 C C sing N N
46 IR07 C15 IR C sing N N
47 IR07 N14 IR N sing N N
48 C48 O53 C O doub N N
49 C48 C49 C C sing N N
50 C36 C35 C C doub N Y
51 C39 C40 C C doub N Y
52 C49 C50 C C sing N N
53 C56 C54 C C sing N Y
54 C54 C52 C C sing N N
55 C32 C35 C C sing N Y
56 C32 C29 C C sing N N
57 C18 C15 C C doub N Y
58 C18 C19 C C sing N Y
59 C15 C17 C C sing N Y
60 C50 S51 C S sing N N
61 N14 C29 N C doub N Y
62 N14 C28 N C sing N Y
63 C29 C30 C C sing N Y
64 C28 C31 C C doub N Y
65 C52 S51 C S sing N N
66 C19 C16 C C doub N Y
67 C30 C27 C C doub N Y
68 C17 C20 C C doub N Y
69 C31 C27 C C sing N Y
70 C16 C20 C C sing N Y
71 C16 H1 C H sing N N
72 C17 H2 C H sing N N
73 C01 H3 C H sing N N
74 C02 H4 C H sing N N
75 C04 H5 C H sing N N
76 C05 H6 C H sing N N
77 C11 H7 C H sing N N
78 C19 H8 C H sing N N
79 C20 H9 C H sing N N
80 C24 H10 C H sing N N
81 C27 H11 C H sing N N
82 C28 H12 C H sing N N
83 C30 H13 C H sing N N
84 C36 H14 C H sing N N
85 C37 H15 C H sing N N
86 C38 H16 C H sing N N
87 C38 H17 C H sing N N
88 C40 H18 C H sing N N
89 C41 H19 C H sing N N
90 C42 H20 C H sing N N
91 C44 H21 C H sing N N
92 C45 H22 C H sing N N
93 C49 H23 C H sing N N
94 C49 H24 C H sing N N
95 C50 H25 C H sing N N
96 C50 H26 C H sing N N
97 C52 H27 C H sing N N
98 C52 H28 C H sing N N
99 C55 H29 C H sing N N
100 C56 H30 C H sing N N
101 C58 H31 C H sing N N
102 C59 H32 C H sing N N
103 C12 H33 C H sing N N
104 C25 H34 C H sing N N
105 C31 H35 C H sing N N
106 C35 H36 C H sing N N
107 C39 H37 C H sing N N
108 C43 H38 C H sing N N
109 C46 H39 C H sing N N
110 N47 H40 N H sing N N