Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OAH    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2P P O P doub 1.48 N N
2 O3P P O P sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 P O1P P O sing 1.61 N N
5 C2 N1 C N doub 1.32 N Y
6 N1 C6 N C sing 1.33 N Y
7 C2 N3 C N sing 1.32 N Y
8 C2 H2 C H sing 1.08 N N
9 N3 C4 N C doub 1.33 N Y
10 C4 N9 C N sing 1.37 N Y
11 C4 C5 C C sing 1.41 N Y
12 C6 C5 C C doub 1.41 N Y
13 C5 N7 C N sing 1.35 N Y
14 C6 N6 C N sing 1.38 N N
15 N6 HN6 N H sing 0.97 N N
16 N6 HN6A N H sing 0.97 N N
17 C8 N7 C N doub 1.3 N Y
18 N9 C8 N C sing 1.36 N Y
19 C8 H8 C H sing 1.08 N N
20 C1' N9 C N sing 1.46 N N
21 O4' C1' O C sing 1.44 N N
22 C1' C2' C C sing 1.54 N N
23 C1' H1' C H sing 1.09 N N
24 O1P HO1P O H sing 0.97 N N
25 C3' C2' C C sing 1.55 N N
26 C2' H2' C H sing 1.09 N N
27 C2' H2'A C H sing 1.09 N N
28 C4' C3' C C sing 1.55 N N
29 C3' O3' C O sing 1.43 N N
30 C3' H3' C H sing 1.09 N N
31 O3' HO3' O H sing 0.97 N N
32 O3P HO3P O H sing 0.97 N N
33 C5' C4' C C sing 1.53 N N
34 C4' O4' C O sing 1.44 N N
35 C4' H4' C H sing 1.09 N N
36 O5' C5' O C sing 1.43 N N
37 C5' H5' C H sing 1.09 N N
38 C5' H5'A C H sing 1.09 N N