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PDBeChem : Chemical Bonds
Molecule :
ODP
Bonds between two atoms of the molecule
Total Number of Bonds: 82
50
10 per page
20 per page
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Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
O1X
P2B
O
P
doub
1.5
N
N
2
P2B
O2X
P
O
sing
1.62
N
N
3
P2B
O3X
P
O
sing
1.62
N
N
4
P2B
O2B
P
O
sing
1.62
N
N
5
O2X
HOP2
O
H
sing
0.98
N
N
6
O3X
HOP3
O
H
sing
0.98
N
N
7
O2B
C2B
O
C
sing
1.41
N
N
8
C2B
C3B
C
C
sing
1.52
N
N
9
C2B
C1B
C
C
sing
1.52
N
N
10
C2B
H2B
C
H
sing
1.1
N
N
11
C3B
O3B
C
O
sing
1.43
N
N
12
C3B
C4B
C
C
sing
1.52
N
N
13
C3B
H3B
C
H
sing
1.09
N
N
14
O3B
HO3A
O
H
sing
0.97
N
N
15
C1B
N9A
C
N
sing
1.46
N
N
16
C1B
O4B
C
O
sing
1.44
N
N
17
C1B
H1B
C
H
sing
1.1
N
N
18
N9A
C8A
N
C
sing
1.37
N
Y
19
N9A
C4A
N
C
sing
1.37
N
Y
20
C8A
N7A
C
N
doub
1.32
N
Y
21
C8A
H8A
C
H
sing
1.08
N
N
22
N7A
C5A
N
C
sing
1.37
N
Y
23
C5A
C4A
C
C
doub
1.39
N
Y
24
C5A
C6A
C
C
sing
1.39
N
Y
25
C4A
N3A
C
N
sing
1.34
N
Y
26
N3A
C2A
N
C
doub
1.35
N
Y
27
C2A
N1A
C
N
sing
1.35
N
Y
28
C2A
H2A
C
H
sing
1.09
N
N
29
N1A
C6A
N
C
doub
1.35
N
Y
30
C6A
N6A
C
N
sing
1.41
N
N
31
N6A
H62A
N
H
sing
1.0
N
N
32
N6A
H61A
N
H
sing
1.0
N
N
33
O4B
C4B
O
C
sing
1.45
N
N
34
C4B
C5B
C
C
sing
1.52
N
N
35
C4B
H4B
C
H
sing
1.09
N
N
36
C5B
O5B
C
O
sing
1.42
N
N
37
C5B
H51A
C
H
sing
1.09
N
N
38
C5B
H52A
C
H
sing
1.09
N
N
39
O5B
PA
O
P
sing
1.62
N
N
40
PA
O1A
P
O
doub
1.5
N
N
41
PA
O2A
P
O
sing
1.62
N
N
42
PA
O3
P
O
sing
1.62
N
N
43
O2A
HOA2
O
H
sing
0.98
N
N
44
O3
PN
O
P
sing
1.62
N
N
45
PN
O1N
P
O
doub
1.5
N
N
46
PN
O2N
P
O
sing
1.62
N
N
47
PN
O5D
P
O
sing
1.62
N
N
48
O5D
C5D
O
C
sing
1.42
N
N
49
C5D
C4D
C
C
sing
1.52
N
N
50
C5D
H51N
C
H
sing
1.09
N
N
51
C5D
H52N
C
H
sing
1.09
N
N
52
C4D
O4D
C
O
sing
1.44
N
N
53
C4D
C3D
C
C
sing
1.52
N
N
54
C4D
H4D
C
H
sing
1.09
N
N
55
O4D
C1D
O
C
sing
1.44
N
N
56
C1D
C2D
C
C
sing
1.52
N
N
57
C1D
N1N
C
N
sing
1.47
N
N
58
C1D
H1D
C
H
sing
1.1
N
N
59
C2D
O2D
C
O
sing
1.42
N
N
60
C2D
C3D
C
C
sing
1.52
N
N
61
C2D
H2D
C
H
sing
1.1
N
N
62
O2D
HO2N
O
H
sing
0.97
N
N
63
C3D
O3D
C
O
sing
1.43
N
N
64
C3D
H3D
C
H
sing
1.09
N
N
65
O3D
HO3N
O
H
sing
0.97
N
N
66
N1N
C2N
N
C
doub
1.29
N
N
67
N1N
C6N
N
C
sing
1.42
N
N
68
C2N
C3N
C
C
sing
1.5
N
N
69
C2N
H2N
C
H
sing
1.1
N
N
70
C3N
C7N
C
C
sing
1.5
N
N
71
C3N
C4N
C
C
sing
1.51
N
N
72
C3N
H3N
C
H
sing
1.1
N
N
73
C7N
N7N
C
N
sing
1.38
N
N
74
C7N
O7N
C
O
doub
1.23
N
N
75
N7N
H72N
N
H
sing
1.02
N
N
76
N7N
H71N
N
H
sing
1.01
N
N
77
C4N
O99
C
O
doub
1.23
N
N
78
C4N
C5N
C
C
sing
1.47
N
N
79
C5N
C6N
C
C
doub
1.33
N
N
80
C5N
H5N
C
H
sing
1.08
N
N
81
C6N
H6N
C
H
sing
1.09
N
N
82
HO1
O2N
H
O
sing
0.98
N
N