Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OED    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O4 C23 O C doub 1.21 N N
2 C23 O5 C O sing 1.34 N N
3 C23 C22 C C sing 1.51 N N
4 C17 C18 C C doub 1.38 N Y
5 C17 C16 C C sing 1.38 N Y
6 N4 C4 N C sing 1.37 N N
7 C21 O3 C O sing 1.43 N N
8 C18 C19 C C sing 1.39 N Y
9 C22 C16 C C sing 1.51 N N
10 C16 C15 C C doub 1.39 N Y
11 C19 O3 C O sing 1.36 N N
12 C19 C20 C C doub 1.39 N Y
13 C4 N1 C N doub 1.31 N N
14 C4 N2 C N sing 1.36 N N
15 N1 C1 N C sing 1.34 N N
16 C15 C20 C C sing 1.39 N Y
17 C15 N5 C N sing 1.4 N N
18 N5 C14 N C sing 1.35 N N
19 N2 C3 N C sing 1.35 N N
20 C1 N3 C N sing 1.36 N Y
21 C1 C2 C C doub 1.4 N Y
22 N3 C6 N C sing 1.37 N Y
23 C10 C9 C C doub 1.38 N Y
24 C10 C11 C C sing 1.4 N Y
25 C3 C2 C C sing 1.41 N N
26 C3 O1 C O doub 1.22 N N
27 C9 C8 C C sing 1.38 N Y
28 C14 C11 C C sing 1.48 N N
29 C14 O2 C O doub 1.22 N N
30 C2 C5 C C sing 1.46 N Y
31 C11 C12 C C doub 1.4 N Y
32 C6 C5 C C doub 1.34 N Y
33 C5 C7 C C sing 1.51 N N
34 C8 C7 C C sing 1.51 N N
35 C8 C13 C C doub 1.38 N Y
36 C12 C13 C C sing 1.38 N Y
37 C6 H1 C H sing 1.08 N N
38 C7 H2 C H sing 1.09 N N
39 C7 H3 C H sing 1.09 N N
40 C9 H4 C H sing 1.08 N N
41 C10 H5 C H sing 1.08 N N
42 C12 H6 C H sing 1.08 N N
43 C13 H7 C H sing 1.08 N N
44 C18 H8 C H sing 1.08 N N
45 C20 H9 C H sing 1.08 N N
46 C21 H10 C H sing 1.09 N N
47 C21 H11 C H sing 1.09 N N
48 C21 H12 C H sing 1.09 N N
49 C22 H13 C H sing 1.09 N N
50 C22 H14 C H sing 1.09 N N
51 C17 H15 C H sing 1.08 N N
52 N2 H16 N H sing 0.97 N N
53 N3 H17 N H sing 0.97 N N
54 N4 H18 N H sing 0.97 N N
55 N4 H19 N H sing 0.97 N N
56 N5 H20 N H sing 0.97 N N
57 O5 H21 O H sing 0.97 N N