Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OFD    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N4 C1 N C sing 1.37 N N
2 N2 C1 N C doub 1.31 N N
3 N2 C2 N C sing 1.34 N N
4 C1 N1 C N sing 1.36 N N
5 N3 C2 N C sing 1.36 N Y
6 N3 C6 N C sing 1.37 N Y
7 C2 C3 C C doub 1.4 N Y
8 O2 C14 O C doub 1.22 N N
9 N1 C4 N C sing 1.35 N N
10 C10 C9 C C doub 1.38 N Y
11 C10 C11 C C sing 1.4 N Y
12 C6 C5 C C doub 1.34 N Y
13 C22 C16 C C sing 1.51 N N
14 C22 C23 C C sing 1.51 N N
15 C3 C4 C C sing 1.41 N N
16 C3 C5 C C sing 1.46 N Y
17 C9 C8 C C sing 1.38 N Y
18 C14 C11 C C sing 1.48 N N
19 C14 N5 C N sing 1.35 N N
20 C4 O1 C O doub 1.22 N N
21 O3 C23 O C doub 1.21 N N
22 C17 C16 C C doub 1.38 N Y
23 C17 C18 C C sing 1.38 N Y
24 C16 C15 C C sing 1.39 N Y
25 C5 C7 C C sing 1.51 N N
26 C23 O4 C O sing 1.34 N N
27 C11 C12 C C doub 1.4 N Y
28 C18 C19 C C doub 1.4 N Y
29 C15 N5 C N sing 1.4 N N
30 C15 C20 C C doub 1.39 N Y
31 C8 C7 C C sing 1.51 N N
32 C8 C13 C C doub 1.38 N Y
33 C19 C20 C C sing 1.39 N Y
34 C19 C21 C C sing 1.43 N N
35 C12 C13 C C sing 1.38 N Y
36 C21 N6 C N trip 1.14 N N
37 C6 H1 C H sing 1.08 N N
38 C7 H2 C H sing 1.09 N N
39 C7 H3 C H sing 1.09 N N
40 C9 H4 C H sing 1.08 N N
41 C10 H5 C H sing 1.08 N N
42 C12 H6 C H sing 1.08 N N
43 C13 H7 C H sing 1.08 N N
44 C17 H8 C H sing 1.08 N N
45 C18 H9 C H sing 1.08 N N
46 C20 H10 C H sing 1.08 N N
47 C22 H11 C H sing 1.09 N N
48 C22 H12 C H sing 1.09 N N
49 N1 H13 N H sing 0.97 N N
50 N3 H14 N H sing 0.97 N N
51 N4 H15 N H sing 0.97 N N
52 N4 H16 N H sing 0.97 N N
53 N5 H17 N H sing 0.97 N N
54 O4 H18 O H sing 0.97 N N