Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OM7    

Bonds between two atoms of the molecule

Total Number of Bonds: 117


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C44 C43 C C doub 1.35 Z N
2 C44 C45 C C sing 1.55 N N
3 C43 C42 C C sing 1.55 N N
4 C46 C45 C C sing 1.56 N N
5 C46 C48 C C sing 1.56 N N
6 O37 S35 O S doub 1.47 N N
7 O34 C32 O C doub 1.19 N N
8 C48 C17 C C sing 1.56 N N
9 C42 C47 C C sing 1.54 N N
10 C42 C09 C C sing 1.54 N N
11 O36 S35 O S doub 1.47 N N
12 C47 C09 C C sing 1.53 N N
13 S35 N33 S N sing 1.72 N N
14 S35 C38 S C sing 1.83 N N
15 C32 C09 C C sing 1.55 N N
16 C32 N33 C N sing 1.47 N N
17 C09 N08 C N sing 1.48 N N
18 C17 C16 C C sing 1.57 N N
19 C39 C38 C C sing 1.53 N N
20 C39 C40 C C sing 1.53 N N
21 C38 C41 C C sing 1.54 N N
22 C38 C40 C C sing 1.53 N N
23 C16 C11 C C sing 1.52 N N
24 O07 C06 O C doub 1.19 N N
25 N08 C06 N C sing 1.48 N N
26 O56 C55 O C doub 1.19 N N
27 O12 C10 O C doub 1.19 N N
28 C06 C01 C C sing 1.4 N N
29 C11 C10 C C sing 1.55 N N
30 C11 N13 C N sing 1.45 N N
31 C10 N05 C N sing 1.51 N N
32 N13 C14 N C sing 1.49 N N
33 C57 C55 C C sing 1.55 N N
34 C55 N50 C N sing 1.47 N N
35 N05 C01 N C sing 1.58 N N
36 N05 C04 N C sing 1.34 N N
37 C01 C02 C C sing 1.58 N N
38 C14 C49 C C sing 1.55 N N
39 C14 O15 C O doub 1.19 N N
40 C49 N50 C N sing 1.46 N N
41 C49 C51 C C sing 1.54 N N
42 C04 C03 C C sing 1.66 N N
43 C02 C03 C C sing 1.3 N N
44 C51 C52 C C sing 1.55 N N
45 C51 C53 C C sing 1.53 N N
46 C03 O18 C O sing 1.44 N N
47 O18 C19 O C sing 1.43 N N
48 C52 C54 C C sing 1.55 N N
49 C19 N20 C N doub 1.46 N Y
50 C19 C24 C C sing 1.55 N Y
51 C31 C24 C C sing 1.54 N N
52 N20 C21 N C sing 1.48 N Y
53 C24 N23 C N doub 1.46 N Y
54 C21 C25 C C doub 1.56 N Y
55 C21 C22 C C sing 1.52 N Y
56 N23 C22 N C sing 1.49 N Y
57 C25 C26 C C sing 1.54 N Y
58 C22 C28 C C doub 1.56 N Y
59 C30 O29 C O sing 1.41 N N
60 C26 O29 C O sing 1.41 N N
61 C26 C27 C C doub 1.54 N Y
62 C28 C27 C C sing 1.54 N Y
63 C17 H171 C H sing 1.1 N N
64 C17 H172 C H sing 1.1 N N
65 C28 H281 C H sing 1.08 N N
66 C01 H011 C H sing 1.1 N N
67 C02 H022 C H sing 1.1 N N
68 C02 H021 C H sing 1.1 N N
69 C03 H031 C H sing 1.1 N N
70 C04 H041 C H sing 1.1 N N
71 C04 H042 C H sing 1.1 N N
72 C11 H111 C H sing 1.1 N N
73 C16 H162 C H sing 1.1 N N
74 C16 H161 C H sing 1.1 N N
75 C25 H251 C H sing 1.08 N N
76 C27 H271 C H sing 1.08 N N
77 C30 H301 C H sing 1.1 N N
78 C30 H303 C H sing 1.1 N N
79 C30 H302 C H sing 1.1 N N
80 C31 H313 C H sing 1.1 N N
81 C31 H311 C H sing 1.1 N N
82 C31 H312 C H sing 1.1 N N
83 C39 H392 C H sing 1.1 N N
84 C39 H391 C H sing 1.1 N N
85 C40 H402 C H sing 1.1 N N
86 C40 H401 C H sing 1.1 N N
87 C41 H412 C H sing 1.1 N N
88 C41 H411 C H sing 1.1 N N
89 C41 H413 C H sing 1.1 N N
90 C42 H421 C H sing 1.1 N N
91 C43 H431 C H sing 1.08 N N
92 C44 H441 C H sing 1.08 N N
93 C45 H451 C H sing 1.1 N N
94 C45 H452 C H sing 1.1 N N
95 C46 H461 C H sing 1.1 N N
96 C46 H462 C H sing 1.1 N N
97 C47 H471 C H sing 1.1 N N
98 C47 H472 C H sing 1.1 N N
99 C48 H482 C H sing 1.1 N N
100 C48 H481 C H sing 1.1 N N
101 C49 H491 C H sing 1.1 N N
102 C51 H511 C H sing 1.1 N N
103 C52 H522 C H sing 1.1 N N
104 C52 H521 C H sing 1.1 N N
105 C53 H531 C H sing 1.1 N N
106 C53 H533 C H sing 1.1 N N
107 C53 H532 C H sing 1.1 N N
108 C54 H542 C H sing 1.1 N N
109 C54 H541 C H sing 1.1 N N
110 C54 H543 C H sing 1.1 N N
111 C57 H571 C H sing 1.1 N N
112 C57 H573 C H sing 1.1 N N
113 C57 H572 C H sing 1.1 N N
114 N08 H081 N H sing 1.0 N N
115 N13 H131 N H sing 1.0 N N
116 N33 H331 N H sing 1.0 N N
117 N50 H501 N H sing 1.0 N N