Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : ONV    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O C O C doub 1.21 N N
2 N C N C sing 1.34 N N
3 N C2 N C sing 1.47 N N
4 C O1 C O sing 1.34 N N
5 C2 C1 C C sing 1.54 N N
6 O1 C1 O C sing 1.46 N N
7 C1 C3 C C sing 1.53 N N
8 C3 O2 C O sing 1.43 N N
9 O2 C4 O C sing 1.36 N N
10 C6 C4 C C doub 1.38 N Y
11 C6 C7 C C sing 1.39 N Y
12 C4 C5 C C sing 1.4 N Y
13 C7 N11 C N sing 1.38 N Y
14 C7 C8 C C doub 1.41 N Y
15 N11 C10 N C sing 1.38 N Y
16 C5 CL C CL sing 1.74 N N
17 C5 C9 C C doub 1.36 N Y
18 C8 C9 C C sing 1.4 N Y
19 C8 C11 C C sing 1.41 N Y
20 O3 C12 O C doub 1.22 N N
21 C10 C12 C C sing 1.47 N N
22 C10 C11 C C doub 1.36 N Y
23 C12 N2 C N sing 1.35 N N
24 N2 C13 N C sing 1.46 N N
25 C13 C14 C C sing 1.51 N N
26 C13 C21 C C sing 1.53 N N
27 O6 C21 O C sing 1.43 N N
28 C19 C14 C C doub 1.38 N Y
29 C19 C18 C C sing 1.38 N Y
30 C14 C15 C C sing 1.38 N Y
31 C18 C17 C C doub 1.4 N Y
32 C15 C16 C C doub 1.38 N Y
33 C16 C17 C C sing 1.4 N Y
34 C17 C20 C C sing 1.48 N N
35 O5 C20 O C doub 1.21 N N
36 C20 O4 C O sing 1.35 N N
37 C1 H1 C H sing 1.09 N N
38 C2 H2 C H sing 1.09 N N
39 C2 H3 C H sing 1.09 N N
40 C3 H4 C H sing 1.09 N N
41 C3 H5 C H sing 1.09 N N
42 C6 H6 C H sing 1.08 N N
43 C9 H7 C H sing 1.08 N N
44 C11 H8 C H sing 1.08 N N
45 C13 H9 C H sing 1.09 N N
46 C15 H10 C H sing 1.08 N N
47 C16 H11 C H sing 1.08 N N
48 O4 H12 O H sing 0.97 N N
49 C18 H13 C H sing 1.08 N N
50 C19 H14 C H sing 1.08 N N
51 C21 H15 C H sing 1.09 N N
52 C21 H16 C H sing 1.09 N N
53 O6 H17 O H sing 0.97 N N
54 N2 H18 N H sing 0.97 N N
55 N11 H19 N H sing 0.97 N N
56 N H20 N H sing 0.97 N N