Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OPM    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C3' C4' C C sing 1.53 N N
2 C3' C2' C C sing 1.53 N N
3 C3' H3'1 C H sing 1.09 N N
4 C3' H3'2 C H sing 1.09 N N
5 C4' C5' C C sing 1.53 N N
6 C4' H4'1 C H sing 1.09 N N
7 C4' H4'2 C H sing 1.09 N N
8 C5' H5'1 C H sing 1.09 N N
9 C5' H5'2 C H sing 1.09 N N
10 C5' H5'3 C H sing 1.09 N N
11 C1' C2' C C sing 1.53 N N
12 C1' O1 C O sing 1.43 N N
13 C1' H1'1 C H sing 1.09 N N
14 C1' H1'2 C H sing 1.09 N N
15 C2' H2'1 C H sing 1.09 N N
16 C2' H2'2 C H sing 1.09 N N
17 C2 O2 C O sing 1.43 N N
18 C2 C3 C C sing 1.53 N N
19 C2 C1 C C sing 1.53 N N
20 C2 H2 C H sing 1.09 N N
21 O2 HO2 O H sing 0.97 N N
22 C3 O3 C O sing 1.43 N N
23 C3 C4 C C sing 1.53 N N
24 C3 H3 C H sing 1.09 N N
25 O3 HO3 O H sing 0.97 N N
26 C4 O4 C O sing 1.43 N N
27 C4 C5 C C sing 1.53 N N
28 C4 H4 C H sing 1.09 N N
29 O4 HO4 O H sing 0.97 N N
30 C5 O5 C O sing 1.43 N N
31 C5 C6 C C sing 1.53 N N
32 C5 H5 C H sing 1.09 N N
33 O5 C1 O C sing 1.42 N N
34 C6 O6 C O sing 1.43 N N
35 C6 H61 C H sing 1.09 N N
36 C6 H62 C H sing 1.09 N N
37 O6 HO6 O H sing 0.97 N N
38 O1 C1 O C sing 1.43 N N
39 C1 H1 C H sing 1.09 N N