Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : OXK    

Bonds between two atoms of the molecule

Total Number of Bonds: 91


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C8 N9 C N sing 1.37 N Y
2 N9 C4 N C sing 1.37 N Y
3 C4 C5 C C sing 1.39 N Y
4 C8 N7 C N doub 1.32 N Y
5 C5 N7 C N sing 1.37 N Y
6 C4 N3 C N doub 1.34 N Y
7 N3 C2 N C sing 1.35 N Y
8 C2 N1 C N doub 1.35 N Y
9 C5 C6 C C doub 1.39 N Y
10 N1 C6 N C sing 1.35 N Y
11 C6 N6 C N sing 1.41 N N
12 N9 C1' N C sing 1.46 N N
13 C1' C2' C C sing 1.53 N N
14 C2' O2' C O sing 1.43 N N
15 C2' C3' C C sing 1.52 N N
16 C3' O3' C O sing 1.41 N N
17 C3' C4' C C sing 1.52 N N
18 C1' O4' C O sing 1.44 N N
19 C4' O4' C O sing 1.44 N N
20 C4' C5' C C sing 1.52 N N
21 C5' O5' C O sing 1.42 N N
22 O5' P1 O P sing 1.62 N N
23 P1 O11 P O sing 1.62 N N
24 P1 O12 P O doub 1.5 N N
25 P1 O6 P O sing 1.62 N N
26 O6 P2 O P sing 1.62 N N
27 P2 O21 P O sing 1.62 N N
28 P2 O22 P O doub 1.5 N N
29 P2 O7 P O sing 1.61 N N
30 O7 CPB O C sing 1.42 N N
31 CPB CPA C C sing 1.55 N N
32 CPA CP7 C C sing 1.56 N N
33 CPA CP9 C C sing 1.55 N N
34 CPA CP8 C C sing 1.54 N N
35 CP7 OP3 C O sing 1.43 N N
36 CP7 CP6 C C sing 1.53 N N
37 CP6 OP2 C O doub 1.23 N N
38 CP6 NP2 C N sing 1.39 N N
39 NP2 CP5 N C sing 1.44 N N
40 CP5 CP4 C C sing 1.52 N N
41 CP4 CP3 C C sing 1.52 N N
42 CP3 OP1 C O doub 1.23 N N
43 CP3 NP1 C N sing 1.39 N N
44 NP1 CP2 N C sing 1.45 N N
45 CP2 CP1 C C sing 1.52 N N
46 CP1 S C S sing 1.82 N N
47 O3' P3 O P sing 1.61 N N
48 P3 O31 P O sing 1.62 N N
49 P3 O32 P O doub 1.5 N N
50 P3 O33 P O sing 1.62 N N
51 S CM1 S C sing 1.73 N N
52 CM1 OM2 C O doub 1.21 N N
53 CM1 CM2 C C sing 1.49 N N
54 OM3 CM2 O C sing 1.34 N N
55 OM4 CM2 O C doub 1.21 N N
56 C8 H8 C H sing 1.08 N N
57 C1' H1' C H sing 1.1 N N
58 C2 H2 C H sing 1.08 N N
59 N6 H6N1 N H sing 1.0 N N
60 N6 H6N2 N H sing 1.0 N N
61 C2' H2' C H sing 1.09 N N
62 O2' HA O H sing 0.97 N N
63 C3' H3' C H sing 1.1 N N
64 C4' H4' C H sing 1.1 N N
65 C5' H5'1 C H sing 1.09 N N
66 C5' H5'2 C H sing 1.09 N N
67 O11 H11 O H sing 0.98 N N
68 O21 H21 O H sing 0.98 N N
69 CPB HPB1 C H sing 1.09 N N
70 CPB HPB2 C H sing 1.1 N N
71 CP7 HP7 C H sing 1.1 N N
72 CP9 HP91 C H sing 1.1 N N
73 CP9 HP92 C H sing 1.1 N N
74 CP9 HP93 C H sing 1.1 N N
75 CP8 HP81 C H sing 1.1 N N
76 CP8 HP82 C H sing 1.1 N N
77 CP8 HP83 C H sing 1.09 N N
78 OP3 HP3 O H sing 0.97 N N
79 NP2 HP2 N H sing 1.02 N N
80 CP5 HP51 C H sing 1.1 N N
81 CP5 HP52 C H sing 1.1 N N
82 CP4 HP41 C H sing 1.1 N N
83 CP4 HP42 C H sing 1.1 N N
84 NP1 HP1 N H sing 1.02 N N
85 CP2 HP21 C H sing 1.09 N N
86 CP2 HP22 C H sing 1.1 N N
87 CP1 HP11 C H sing 1.09 N N
88 CP1 HP12 C H sing 1.09 N N
89 O31 H31 O H sing 0.98 N N
90 O33 H33 O H sing 0.98 N N
91 OM3 HM3 O H sing 0.98 N N