Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P2P    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O doub 1.48 N N
2 P O2P P O sing 1.61 N N
3 P O3P P O sing 1.61 N N
4 P O6' P O sing 1.61 N N
5 O2P HOP2 O H sing 0.97 N N
6 O3P HOP3 O H sing 0.97 N N
7 O6' C5' O C sing 1.43 N N
8 C5' C4' C C sing 1.53 N N
9 C5' H5'1 C H sing 1.09 N N
10 C5' H5'2 C H sing 1.09 N N
11 C4' O5' C O sing 1.45 N N
12 C4' C3' C C sing 1.54 N N
13 C4' H4' C H sing 1.09 N N
14 O5' C1' O C sing 1.44 N N
15 C3' O3' C O sing 1.43 N N
16 C3' C2' C C sing 1.54 N N
17 C3' H3' C H sing 1.09 N N
18 O3' HO3' O H sing 0.97 N N
19 C2' O2' C O sing 1.43 N N
20 C2' C1' C C sing 1.55 N N
21 C2' H2' C H sing 1.09 N N
22 O2' HO2' O H sing 0.97 N N
23 C1' N7 C N sing 1.47 N N
24 C1' H1' C H sing 1.09 N N
25 C8 N9 C N doub 1.3 N Y
26 C8 N7 C N sing 1.35 N Y
27 C8 H8 C H sing 1.08 N N
28 N9 C4 N C sing 1.35 N Y
29 C4 C5 C C doub 1.41 N Y
30 C4 N3 C N sing 1.33 N Y
31 C5 N7 C N sing 1.38 N Y
32 C5 C6 C C sing 1.39 N Y
33 N3 C2 N C doub 1.32 N Y
34 C2 N1 C N sing 1.32 N Y
35 C2 O11 C O sing 1.36 N N
36 N1 C6 N C doub 1.33 N Y
37 C6 H6 C H sing 1.08 N N
38 O11 HO11 O H sing 0.97 N N