Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P5B    

Bonds between two atoms of the molecule

Total Number of Bonds: 74


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C14 O1 C O doub 1.21 N N
2 C14 N5 C N sing 1.35 N N
3 C14 C5 C C sing 1.51 N N
4 N5 C15 N C sing 1.47 N N
5 N5 HN5 N H sing 0.97 N N
6 C15 C18 C C sing 1.53 N N
7 C15 C20 C C sing 1.51 N N
8 C15 H15 C H sing 1.09 N N
9 C18 C19 C C sing 1.53 N N
10 C18 H181 C H sing 1.09 N N
11 C18 H182 C H sing 1.09 N N
12 C19 C2 C C sing 1.51 N N
13 C19 H191 C H sing 1.09 N N
14 C19 H192 C H sing 1.09 N N
15 C20 O5 C O doub 1.21 N N
16 C20 N6 C N sing 1.35 N N
17 N6 C21 N C sing 1.46 N N
18 N6 HN6 N H sing 0.97 N N
19 C21 C25 C C sing 1.51 N N
20 C21 H211 C H sing 1.09 N N
21 C21 H212 C H sing 1.09 N N
22 C16 C17 C C sing 1.38 N Y
23 C16 C25 C C doub 1.38 N Y
24 C16 H16 C H sing 1.08 N N
25 C17 C22 C C doub 1.4 N Y
26 C17 H17 C H sing 1.08 N N
27 C22 C23 C C sing 1.39 N Y
28 C22 C26 C C sing 1.48 N N
29 C23 C24 C C doub 1.38 N Y
30 C23 H23 C H sing 1.08 N N
31 C24 C25 C C sing 1.38 N Y
32 C24 H24 C H sing 1.08 N N
33 C26 N1 C N doub 1.3 N N
34 C26 N2 C N sing 1.38 N N
35 N1 HN1 N H sing 0.97 N N
36 C2 O2 C O doub 1.21 N N
37 C2 N3 C N sing 1.35 N N
38 N3 HN31 N H sing 0.97 N N
39 N3 HN32 N H sing 0.97 N N
40 C1 C5 C C sing 1.53 N N
41 C1 C12 C C sing 1.51 N N
42 C1 H11A C H sing 1.09 N N
43 C1 H12 C H sing 1.09 N N
44 N4 C5 N C sing 1.46 N N
45 N4 S1 N S sing 1.66 N N
46 N4 HN4 N H sing 0.97 N N
47 C5 H5 C H sing 1.09 N N
48 S1 O4 S O doub 1.42 N N
49 S1 O3 S O doub 1.42 N N
50 S1 C9 S C sing 1.81 N N
51 C9 C8 C C sing 1.53 N N
52 C9 H91 C H sing 1.09 N N
53 C9 H92 C H sing 1.09 N N
54 C8 H81 C H sing 1.09 N N
55 C8 H82 C H sing 1.09 N N
56 C8 H83 C H sing 1.09 N N
57 N2 HN21 N H sing 0.97 N N
58 N2 HN22 N H sing 0.97 N N
59 C10 C7 C C doub 1.38 N Y
60 C10 C6 C C sing 1.39 N Y
61 C10 H10 C H sing 1.08 N N
62 C7 C3 C C sing 1.39 N Y
63 C7 H7 C H sing 1.08 N N
64 C3 C4 C C doub 1.41 N Y
65 C3 N7 C N sing 1.38 N Y
66 C4 C11 C C sing 1.4 N Y
67 C4 C12 C C sing 1.46 N Y
68 C11 C6 C C doub 1.37 N Y
69 C11 H11 C H sing 1.08 N N
70 C6 H6 C H sing 1.08 N N
71 N7 C13 N C sing 1.37 N Y
72 N7 HN7 N H sing 0.97 N N
73 C13 C12 C C doub 1.34 N Y
74 C13 H13 C H sing 1.08 N N