Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P8J    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C16 O11 C O sing 1.43 N N
2 O7 C10 O C sing 1.43 N N
3 O11 C12 O C sing 1.43 N N
4 O8 C12 O C sing 1.43 N N
5 O8 C11 O C sing 1.43 N N
6 C10 C11 C C sing 1.53 N N
7 C12 C13 C C sing 1.53 N N
8 C11 C15 C C sing 1.53 N N
9 C13 O9 C O sing 1.43 N N
10 C13 C14 C C sing 1.53 N N
11 O5 C9 O C sing 1.43 N N
12 C15 O10 C O sing 1.43 N N
13 C15 C14 C C sing 1.53 N N
14 C14 O6 C O sing 1.43 N N
15 C4 O1 C O sing 1.43 N N
16 C4 C5 C C sing 1.53 N N
17 C9 C5 C C sing 1.53 N N
18 C9 C8 C C sing 1.53 N N
19 O2 C5 O C sing 1.43 N N
20 O2 C6 O C sing 1.43 N N
21 N2 N3 N N doub 1.29 N Y
22 N2 N1 N N sing 1.29 N Y
23 N3 C1 N C sing 1.34 N Y
24 O6 C3 O C sing 1.43 N N
25 O4 C8 O C sing 1.43 N N
26 C7 C8 C C sing 1.53 N N
27 C7 C6 C C sing 1.53 N N
28 C7 O3 C O sing 1.43 N N
29 N1 C6 N C sing 1.47 N N
30 N1 C2 N C sing 1.35 N Y
31 C1 C3 C C sing 1.51 N N
32 C1 C2 C C doub 1.35 N Y
33 C2 H1 C H sing 1.08 N N
34 C3 H2 C H sing 1.09 N N
35 C3 H3 C H sing 1.09 N N
36 C4 H4 C H sing 1.09 N N
37 C4 H5 C H sing 1.09 N N
38 C5 H6 C H sing 1.09 N N
39 C6 H7 C H sing 1.09 N N
40 C7 H8 C H sing 1.09 N N
41 C10 H9 C H sing 1.09 N N
42 C10 H10 C H sing 1.09 N N
43 C11 H11 C H sing 1.09 N N
44 C12 H12 C H sing 1.09 N N
45 C14 H13 C H sing 1.09 N N
46 C16 H14 C H sing 1.09 N N
47 C16 H15 C H sing 1.09 N N
48 C16 H16 C H sing 1.09 N N
49 C13 H17 C H sing 1.09 N N
50 O9 H18 O H sing 0.97 N N
51 O7 H19 O H sing 0.97 N N
52 C15 H20 C H sing 1.09 N N
53 O10 H21 O H sing 0.97 N N
54 O1 H22 O H sing 0.97 N N
55 C9 H23 C H sing 1.09 N N
56 O5 H24 O H sing 0.97 N N
57 C8 H25 C H sing 1.09 N N
58 O4 H26 O H sing 0.97 N N
59 O3 H27 O H sing 0.97 N N