Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PD5    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 NBF C4 N C sing 1.36 N Y
2 N3 C4 N C doub 1.33 N Y
3 C4 C5 C C sing 1.41 N Y
4 CBB C5 C C sing 1.46 N Y
5 C5 C6 C C doub 1.41 N Y
6 N1 C6 N C sing 1.33 N Y
7 C6 NAC C N sing 1.38 N N
8 C2 N1 C N doub 1.32 N Y
9 N3 C2 N C sing 1.32 N Y
10 CBE CAA C C sing 1.53 N N
11 CAA HAA C H sing 1.09 N N
12 CAA HAAA C H sing 1.09 N N
13 CAA HAAB C H sing 1.09 N N
14 CAB CBE C C sing 1.53 N N
15 CBE NBF C N sing 1.46 N N
16 CBE HBE C H sing 1.09 N N
17 CAB HAB C H sing 1.09 N N
18 CAB HABA C H sing 1.09 N N
19 CAB HABB C H sing 1.09 N N
20 NBF NAS N N sing 1.4 N Y
21 NAS CBB N C doub 1.31 N Y
22 C2 H2 C H sing 1.08 N N
23 NAC HNAC N H sing 0.97 N N
24 NAC HNAA N H sing 0.97 N N
25 CBB CAZ C C sing 1.48 N Y
26 CAN CAZ C C doub 1.39 N Y
27 CAZ CAO C C sing 1.39 N Y
28 CAO CAM C C doub 1.38 N Y
29 CAO HAO C H sing 1.08 N N
30 CAX CAM C C sing 1.39 N Y
31 CAM HAM C H sing 1.08 N N
32 CAN CAL C C sing 1.38 N Y
33 CAN HAN C H sing 1.08 N N
34 CAL CAX C C doub 1.39 N Y
35 CAL HAL C H sing 1.08 N N
36 CAX NAT C N sing 1.4 N N
37 CAV NAT C N sing 1.35 N N
38 NAT HNAT N H sing 0.97 N N
39 OAD CAV O C doub 1.22 N N
40 CAV NAU C N sing 1.35 N N
41 CAY NAU C N sing 1.4 N N
42 NAU HNAU N H sing 0.97 N N
43 CAP CAY C C doub 1.39 N Y
44 CAY CAJ C C sing 1.39 N Y
45 CBA CAP C C sing 1.38 N Y
46 CAP HAP C H sing 1.08 N N
47 CAH CAJ C C doub 1.38 N Y
48 CAJ HAJ C H sing 1.08 N N
49 CAK CAH C C sing 1.38 N Y
50 CAH HAH C H sing 1.08 N N
51 CBA CAK C C doub 1.38 N Y
52 CAK HAK C H sing 1.08 N N
53 CBG CBA C C sing 1.51 N N
54 FAG CBG F C sing 1.4 N N
55 FAE CBG F C sing 1.4 N N
56 CBG FAF C F sing 1.4 N N